PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G24380.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 677aa MW: 73452.1 Da PI: 8.0784

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G24380.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.8	1e-09	192	213	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e Cr+f+r G CkyG++C++ H OPUNC06G24380.2 192 QEVCRNFQR-GSCKYGAQCRYLH 213 799****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.718	189	216	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.51E-5	189	214	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5E-8	189	215	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-7	192	213	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.8E-7	193	213	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MLEKVSGCGG GVERIAASAS ATTAGAAARA KPPPFILSVS VSDEAPTHAI CGCVAGAAPL 60 CCCWVCWCWE RALWTGSIWA GPTQRTPLSW AEPPAARLAH WLLAVTASEK GGGEGVRLRR 120 RPRLELSTEA ATRGKLGQPT LISWRWKEEE EEEEGSSACG GRRGGWEALN PRAGALESNP 180 PSFRFAAMSR RQEVCRNFQR GSCKYGAQCR YLHASPHQQQ QQQQQQQVKP NPFGFGTGSR 240 QQQPSFGSQF QQQQQQQQQK PNPFGFGVQG GNAQSRNAPG PAKPFQNKWV RDPSAQTKQA 300 EAAQPPQVQA AHTSCEDPQS CRQQISEDFK NEAPIWKLTC YAHLRSGPCD IKGDISFEEL 360 RAKAYEEGKQ GHSLQSIVEG ERNLQNTKLM EFTNLINSAR PSQTPSFPTM SSFPEVKNNS 420 SFGASQTNGP PVFSSFSQIG AATNIGPGPG TTTPGMPASS PFGHPSSAPL ATPTFGSSQM 480 KFGVSSVFGN QGSGQSFGNF QAPRFPSSKS PASSVQHRDI DRQSQELLNG MVTLPSVMSE 540 ASVGNNKNEN QDDSIWLKEK WAIGEIPLDE PPQRHWTLIL AAMLQLHDDT KEFEPTSPAA 600 AGPGDYKFVC SISSGRSALL LPIRLRSDDP DVPFDSPDME TNRAIRLNKI ILETNSLKLN 660 VKRSLTSVDY DLSCLGP

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MLEKVSGCGG GVERIAASAS ATTAGAAARA KPPPFILSVS VSDEAPTHAI CGCVAGAAPL  60
CCCWVCWCWE RALWTGSIWA GPTQRTPLSW AEPPAARLAH WLLAVTASEK GGGEGVRLRR  120
RPRLELSTEA ATRGKLGQPT LISWRWKEEE EEEEGSSACG GRRGGWEALN PRAGALESNP  180
PSFRFAAMSR RQEVCRNFQR GSCKYGAQCR YLHASPHQQQ QQQQQQQVKP NPFGFGTGSR  240
QQQPSFGSQF QQQQQQQQQK PNPFGFGVQG GNAQSRNAPG PAKPFQNKWV RDPSAQTKQA  300
EAAQPPQVQA AHTSCEDPQS CRQQISEDFK NEAPIWKLTC YAHLRSGPCD IKGDISFEEL  360
RAKAYEEGKQ GHSLQSIVEG ERNLQNTKLM EFTNLINSAR PSQTPSFPTM SSFPEVKNNS  420
SFGASQTNGP PVFSSFSQIG AATNIGPGPG TTTPGMPASS PFGHPSSAPL ATPTFGSSQM  480
KFGVSSVFGN QGSGQSFGNF QAPRFPSSKS PASSVQHRDI DRQSQELLNG MVTLPSVMSE  540
ASVGNNKNEN QDDSIWLKEK WAIGEIPLDE PPQRHWTLIL AAMLQLHDDT KEFEPTSPAA  600
AGPGDYKFVC SISSGRSALL LPIRLRSDDP DVPFDSPDME TNRAIRLNKI ILETNSLKLN  660
VKRSLTSVDY DLSCLGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RLRRRPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269\|PubMed:18953406, ECO:0000269\|PubMed:22570626}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269\|PubMed:18953406, ECO:0000269\|PubMed:22570626}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107008	0.0	AK107008.1 Oryza sativa Japonica Group cDNA clone:002-120-E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641399.1	0.0	zinc finger CCCH domain-containing protein 46
Swissprot	Q5Z807	0.0	C3H46_ORYSJ; Zinc finger CCCH domain-containing protein 46
TrEMBL	A0A0E0LFD6	0.0	A0A0E0LFD6_ORYPU; Uncharacterized protein
STRING	OPUNC06G24380.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9447	28	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	2e-45	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]