PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G25570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 195aa    MW: 21255.6 Da    PI: 6.6449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G25570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-066183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+Cp C+++F++    + H+r+H
  OPUNC06G25570.1 61 YPCPLCDRHFPTEKAVHGHMRSH 83
                     99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0556188IPR007087Zinc finger, C2H2
PfamPF139126.2E-66184IPR007087Zinc finger, C2H2
SMARTSM003550.00136183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.87E-661133No hitNo description
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PfamPF139122.3E-8110135IPR007087Zinc finger, C2H2
SMARTSM003552.4111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGGQVFVHHH ALGGSVAGGS GGDDPTHPWL SLKSAHEMDA VASWREKLAD MAAAGERAAR  60
YPCPLCDRHF PTEKAVHGHM RSHPGRGWRG MEPPREPSPG DLAADGKWYR YVCDRCKAPF  120
ETRQALGGHR ASHSSKKGCS WHAKQRAMEM AEAAAKPPKN DFDLNDLSLE AIQAAQEEEA  180
AAAAEEEKED KEPNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080971e-154AK108097.1 Oryza sativa Japonica Group cDNA clone:002-139-A09, full insert sequence.
GenBankAP0046851e-154AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBankAP0149621e-154AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642837.18e-98zinc finger protein ZAT2
TrEMBLA0A0E0LFV61e-140A0A0E0LFV6_ORYPU; Uncharacterized protein
STRINGOPUNC06G25570.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.18e-14C2H2-like zinc finger protein