PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G01230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 351aa    MW: 37627.3 Da    PI: 6.5358
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G01230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32224279156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+p+LH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OPUNC07G01230.1 224 KTRRCWSPDLHRKFVAALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 279
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7221281IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-28222280IPR009057Homeodomain-like
SuperFamilySSF466892.15E-16222281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26224279IPR006447Myb domain, plants
PfamPF002497.1E-7226277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLDVGEIGV GAADLSLDLK MFAAKSVGRV RASSSMADCI RRLEEEMGKI EVFRRELPLC  60
VRLLADVIDV MKEEVEKKEE KGGDRKEDEE DADAGDKSNW MSTAQLWTGN SGRDAAADPE  120
KQDKGRISSE AKSNGGGGGA FVGSGSPAFA RPKPSLIRKE DMAYDVRMPD LSLLSPPASA  180
ADESRRQVVG FAQAAARAAA MAASGPALSL QSQPQPAAQQ QARKTRRCWS PDLHRKFVAA  240
LQQLGGPQVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHN RPRVPSSTIV NQPIVLMQGL  300
CYIPQEQSSS QSGSPEGPLH FSGSGMAGGG SSAATVSCEE EDGRSESYGW K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704210.0AK070421.1 Oryza sativa Japonica Group cDNA clone:J023048M12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644652.10.0myb family transcription factor EFM
TrEMBLA0A0E0LGF70.0A0A0E0LGF7_ORYPU; Uncharacterized protein
STRINGOPUNC07G01230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-31G2-like family protein