PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G02500.6
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 792aa    MW: 87266.4 Da    PI: 9.507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G02500.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-16337382248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      grW+ +Ed++l  avk++G+g+W++Ia+ ++ gRt  qc +rw+++l
  OPUNC07G02500.6 337 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 382
                      8******************************.************986 PP
2Myb_DNA-binding31.83.4e-10389433247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 
                      g W +eEd +l+  v ++G+  W++Ia ++++ +Rt+++c  rw+k+
  OPUNC07G02500.6 389 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 433
                      68*****************88.****945777.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.971330386IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-19332384IPR009057Homeodomain-like
SuperFamilySSF466894.58E-26335430IPR009057Homeodomain-like
SMARTSM007173.0E-12335384IPR001005SANT/Myb domain
PfamPF002492.2E-15337382IPR001005SANT/Myb domain
CDDcd001671.21E-11338382No hitNo description
Gene3DG3DSA:1.10.10.603.0E-15385438IPR009057Homeodomain-like
SMARTSM007171.9E-8387436IPR001005SANT/Myb domain
PROSITE profilePS5129413.267389438IPR017930Myb domain
PfamPF002492.6E-8389433IPR001005SANT/Myb domain
CDDcd001674.60E-9390433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAAAP AAAVGAAANG  60
LSDDDDEEEE DEDLALVRSI RENLLLNKAS PSSPLPRPIC VWPPSDSEDD EDDLETLRAI  120
QRRFSHYHSG TSSGSEINTK NEASKEGSGD LFRNGLDEEF DVEKQNKEAI TRTGFPKAAL  180
LLVDALKKNR ACQKLIRRKM ITIEAKIEEN KDLRDRVKCL LDYQLSCRKA FGKILCQKED  240
PRVRLISSRK PCAQSTKNKD KKTPALFLGP ADNPHVSKYK MVLKQFPMSL QKQPWSDVEK  300
EKLAKGIKQQ YQEALILDSI NNGRWRKTLN PERSRVGRWS LDEDKRLMVA VKLFGSGSWN  360
KIAQFIPGRT QSQCNERWRN VLDPDIDLGE WRPEEDSILL ASVDEFGPCW SKIAGAKIPH  420
RTDNMCLRRW RKLCQDKLPS VKAAQQIKKS ILQCNFVDRE TERPAIGPSD LMSLVRSKVD  480
GSDENTSSAQ VRKPRKRSRI PCEDNVLPAS ANSKKKPSRS RSKKQTDENL AVCDVNNSSN  540
CSSGARKRKR SITDKNQVVQ KKMRGSISGD NEAVVETMGC SISSDNEVAM KRKTGSTSVG  600
EEGTAKKTTR GSLSGKEGEV NKRLRGSISG VQKGATKQRM RGSVSIDNHG AVMKSKKAPS  660
RKSAKENSKA DSMANAAFGL DLPTVASEYR DADNGSVNNG RIKSTPRPKQ MNMTEGSADK  720
FSTSTRLADC MSFGRINGSS RVARHLCVSV KPLSNMIQSN GPSDDVSAKE GSRSAEAGTS  780
HGIVPGKDSV VM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-192904384159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-192904384159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654520.0AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883083.10.0myb-like protein L
TrEMBLA0A0E0LGZ60.0A0A0E0LGZ6_ORYPU; Uncharacterized protein
STRINGOPUNC07G02500.40.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.22e-42myb domain protein 4r1