PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G02500.8
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 848aa    MW: 93387 Da    PI: 8.3106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G02500.8genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-08292384147
                      TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 
                      +++W+  E e+l++++kq   +                                              +W++Ia++   gR++ +c srw+++
  OPUNC07G02500.8 292 KQPWSDVEKEKLAKGIKQQYQEalildsinngsstgdfsavdmayaltntagnfevtaeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 384
                      79****************99999***************************************************99888************97 PP
2Myb_DNA-binding292.5e-09392436246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+ E+++l+  v+q G+++W  Ia t+g++Rt+ qc  r+q 
  OPUNC07G02500.8 392 NAWTAREEKRLLLTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 436
                      68**************************************99995 PP
3Myb_DNA-binding43.66.8e-14446489348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       W +eEd++l  av+ +G++ W ++++ m  gRt++qc +rw+k l
  OPUNC07G02500.8 446 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 489
                      6*****************99.*********.************975 PP
4Myb_DNA-binding36.31.3e-11497532238
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      grW+ +Ed++l  avk++G+g+W++Ia+ ++ gRt +
  OPUNC07G02500.8 497 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQN 532
                      8******************************.***76 PP
5Myb_DNA-binding22.13.6e-07536573240
                      SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqc 40 
                      g W +eEd +l+  v ++G+  W++Ia ++++ +Rt+++c
  OPUNC07G02500.8 536 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMC 573
                      68*****************88.****945777.******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.377287385IPR017877Myb-like domain
SMARTSM007171.3E-5291387IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-7292324IPR009057Homeodomain-like
CDDcd001679.28E-4356384No hitNo description
Gene3DG3DSA:1.10.10.603.5E-7360405IPR009057Homeodomain-like
SuperFamilySSF466897.25E-5360395IPR009057Homeodomain-like
PROSITE profilePS500908.548386438IPR017877Myb-like domain
SuperFamilySSF466891.47E-21390485IPR009057Homeodomain-like
SMARTSM007179.7E-4390440IPR001005SANT/Myb domain
PfamPF002499.2E-6392436IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-10406449IPR009057Homeodomain-like
PROSITE profilePS5129416.114439493IPR017930Myb domain
SMARTSM007171.2E-11443491IPR001005SANT/Myb domain
PfamPF002493.1E-12446488IPR001005SANT/Myb domain
CDDcd001671.99E-9447489No hitNo description
Gene3DG3DSA:1.10.10.602.3E-14450492IPR009057Homeodomain-like
SuperFamilySSF466891.83E-15495573IPR009057Homeodomain-like
SMARTSM007177.3495532IPR001005SANT/Myb domain
PfamPF002493.0E-10497532IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-10497532IPR009057Homeodomain-like
CDDcd001674.33E-7498530No hitNo description
PROSITE profilePS5129410.413530586IPR017930Myb domain
SMARTSM007170.075534583IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10536573IPR009057Homeodomain-like
CDDcd001674.83E-6537573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAAAP AAAVGAAANG  60
LSDDDDEEEE DEDLALVRSI RENLLLNKAS PSSPLPRPIC VWPPSDSEDD EDDLETLRAI  120
QRRFSHYHSG TSSGSEINTK NEASKEGSGD LFRNGLDEEF DVEKQNKEAI TRTGFPKAAL  180
LLVDALKKNR ACQKLIRRKM ITIEAKIEEN KDLRDRVKCL LDYQLSCRKA FGKILCQKED  240
PRVRLISSRK PCAQSTKNKD KKTPALFLGP ADNPHVSKYK MVLKQFPMSL QKQPWSDVEK  300
EKLAKGIKQQ YQEALILDSI NNGSSTGDFS AVDMAYALTN TAGNFEVTAE SLRSVLPLIN  360
WDKIAAMYLP GRSGAECESR WLNFDDPLIN HNAWTAREEK RLLLTVQQQG MNNWINIAVT  420
LGTHRTPFQC LVRYQRSLNH CILNKDWAEE EDLQLQAAVN TFGTNWQLVS ASMDGRTGNQ  480
CSNRWRKTLN PERSRVGRWS LDEDKRLMVA VKLFGSGSWN KIAQFIPGRT QNIDLGEWRP  540
EEDSILLASV DEFGPCWSKI AGAKIPHRTD NMCLRSRSKK QTDENLAVCD VNNSSNCSSG  600
ARKRKRSITD KNQVVQKKMR GSISGDNEAV VETMGCSISS DNEVAMKRKT GSTSVGEEGT  660
AKKTTRGSLS GKEGEVNKRL RGSISGVQKG ATKQRMRGSV SIDNHGAVMK SKKAPSRKSA  720
KENSKADSMA NAAFGLDLPT VASEYRDADN GSVNNGRIKS TPRPKQMNMT EGSADKFSTS  780
TRLADCMSFG RINGSSRVAR HLCVSVKPLS NMIQSNGPSD DVSAKEGSRS AEAGTSHGIV  840
PGKDSVVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-203635719155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-203635719155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654520.0AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883083.10.0myb-like protein L
TrEMBLA0A0E0LGZ80.0A0A0E0LGZ8_ORYPU; Uncharacterized protein
STRINGOGLUM07G14260.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-124myb domain protein 4r1