PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G02550.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 504aa    MW: 52165.5 Da    PI: 5.2586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G02550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.9e-06386413227
                      -S---SGGGGTS--TT..TTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCky..GdrCkFaHgp 27 
                      kt+lCrf++ +  C++  G++C++aHg+
  OPUNC07G02550.1 386 KTKLCRFYSHGRVCPRgrGNTCNYAHGE 413
                      9**************7337*******96 PP
2zf-CCCH23.87.7e-08448474127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      yk ++C++f  +  C++ ++C+FaHg+
  OPUNC07G02550.1 448 YKKKICKTFKSGRVCQFAANCRFAHGE 474
                      99***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.032384413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319384414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6385419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-9386418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-11445477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7447477IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-5447474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511447475IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5448474IPR000571Zinc finger, CCCH-type
SMARTSM003560.95479504IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953482504IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAGSEDGYHT ADDHLEGEQR YDDGRHLIPS SGQEEEGSGG RNVVVPSSGQ EGKGSGGRNV  60
VVPGGHVAAE DLSGVGVPVG RDAGGAVAVH VIPSILFGTI HAPAPLSSSI FQGGLVGLKF  120
GLGSGSMVGT GATGFGALPT SSTAEDSADH AAADHLTKEE EEQRYDDDGH LVPRSGQQEE  180
GSGGHDVEED HPDDLVPDLD LDLLVDGVVG PVPGGHLNAD AAAFVPTTGG LQDIYSAISS  240
SAAAYSNYIT SSALAAAGHV SPFLDLPYAR AFDSPPPLEL VGPSSAPPRS ATSHAGLVPY  300
PSPVSPTSDS ERTRDWIMAR AAAALSPAPS RYRYSQTPAS TVTGPFGFMP ISGAPYAPPP  360
SFAPIAGAGP AAGPPQPLSF RLGDDKTKLC RFYSHGRVCP RGRGNTCNYA HGEDDLRMVM  420
PVSSLADAGE ASSSSDSSST AAGQGDKYKK KICKTFKSGR VCQFAANCRF AHGEVELGMK  480
RPCWYFFSGQ PCPRGDTCRF RHSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038291e-108AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043141e-108AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149631e-108AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-108CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.11e-147putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ81e-149C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0E0LH030.0A0A0E0LH03_ORYPU; Uncharacterized protein
STRINGOPUNC07G02550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111