PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G02590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 368aa    MW: 38202.9 Da    PI: 4.7184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G02590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09304328227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +++ G C+ G+ C++aH++
  OPUNC07G02590.1 304 KTVLCMKWRE-GRCHNGGACRYAHSE 328
                      8*********.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-7300333IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4302328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601302329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-10304333IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7304328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.174340368IPR000571Zinc finger, CCCH-type
SMARTSM003563.3341367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAADPNGHRR LPTGDPDQAD ASPYRPVSAV DGVTDGEGEA TYSHFPPGVY GPTVVAYNIR  60
DAANDDDERA RHDQGGGAHD HHHDQPRQDQ RGEAHLHDLP GENSKSPSSS ADQQGNDTAD  120
MTPLAAPAES SYDANFPPLH EHPAAPVPNP APASAPAPAV AGAMGSSSAP VQGDGAPDNH  180
DPPRQDQRGG AQSDHPHDLD SEKTIGPQHG RITTSNGGSG KGKDKAISND GDEPASNSSF  240
SSSDDQQGSD TPTSDSESDT DETPSAAAES SYDVNFPPLL QPNPVPAPAP APAVAGAMGV  300
ASHKTVLCMK WREGRCHNGG ACRYAHSEEE QRIVPEMRGG GGGRPCPEIA TKGWCKFGLN  360
CKYCHGGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114331e-143AK111433.1 Oryza sativa Japonica Group cDNA clone:002-182-H10, full insert sequence.
GenBankCP0126151e-143CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646504.11e-124zinc finger CCCH domain-containing protein 47
SwissprotQ8GW051e-125C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A0E0LH070.0A0A0E0LH07_ORYPU; Uncharacterized protein
STRINGOPUNC07G02590.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]