PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC07G03360.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 170aa MW: 17901.9 Da PI: 6.3417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G03360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F + L H++ H OPUNC07G03360.1 37 FPCLFCDRTFVKSQALGGHQNAH 59 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.26E-5	35	64	No hit	No description
PROSITE profile	PS50157	10.762	37	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MVVNVSLSLA APAARNRDED CAAAPTARVD GKEVRLFPCL FCDRTFVKSQ ALGGHQNAHR 60 KERVAAGWNP YVYYYAAGAP SLSSSSEVTD NLAAARSIPI SSHGCSVGPQ WWSGGGGGGE 120 HAQLLAALGS AGRDDNSVDM PNYRIRASHA ATEISSMGAG DEQLDLELRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646457.1	9e-31	zinc finger protein GIS3
TrEMBL	A0A0E0LH95	1e-121	A0A0E0LH95_ORYPU; Uncharacterized protein
STRING	OPUNC07G03360.1	1e-122	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP384	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	3e-12	C2H2 family protein