PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G03390.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 92aa    MW: 10564.9 Da    PI: 11.1113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G03390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002830123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C+k+F  +  L  H++tH
  OPUNC07G03390.1  8 FECLFCDKTFHKSQALGGHQNTH 30
                     89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-6634No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4631IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.554835IPR007087Zinc finger, C2H2
PfamPF121712.2E-5831IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MEPCRRLFEC LFCDKTFHKS QALGGHQNTH KKDHRVGDWD PYVYGNGNGN HPTAATAVRD  60
PYARDVAAPE AARARARRRR RVQSRHARLR LA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752113.18e-16zinc finger protein 3
TrEMBLA0A0E0LH989e-62A0A0E0LH98_ORYPU; Uncharacterized protein
STRINGOPUNC07G03390.12e-62(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-08C2H2 family protein