PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G04790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 368aa    MW: 41335.1 Da    PI: 4.424
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G04790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35491402102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ ++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  OPUNC07G04790.1  49 FLTKTYDMVDDAGTDGVVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGQRHLLK 133
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  OPUNC07G04790.1 134 NIKRRKP 140
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-6245138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.8E-3945138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3645138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDPILVKEEE EESHGDGGLP VVAGEDAAAA AGVAPRPMEG LHDAGPPPFL TKTYDMVDDA  60
GTDGVVSWSA TSNSFVVWDP HAFATVLLPR FFKHNNFSSF VRQLNTYGFR KVDPDRWEFA  120
NECFLRGQRH LLKNIKRRKP PSHTASNQQS LGPYLEVGHF GYDAEIDRLK RDKQLLMAEV  180
VKLRQEQQNT KAHLKAMEDR LQGTEQRQQQ MMAFLARVMK NPEFLKQLMS QNEMRKELQD  240
AISKKRRRRI DQGPEVDDVG TSSSIEQESP VLFDPQESVE FLVDGFPSDL ENSAMDAGGL  300
VEPQDFDVGV SEQQQIGPQG ELNDNFWEEL LNEGLVGEEN DNPVIEDDMN VLSEKMGYLN  360
SNGPTAGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-284413812120Heat shock factor protein 1
5d5u_B9e-284413821129Heat shock factor protein 1
5d5v_B9e-284413821129Heat shock factor protein 1
5d5v_D9e-284413821129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKNIKRR
2243248KKRRRR
3244249KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4091860.0AM409186.1 Oryza sativa Indica Group mRNA for heat shock factor A2b (hsfA2b gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645272.10.0heat stress transcription factor A-2b
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A0E0LHS30.0A0A0E0LHS3_ORYPU; Uncharacterized protein
STRINGOPUNC07G04790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]