PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G05040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 30887 Da    PI: 6.8039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G05040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08141185554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  OPUNC07G05040.1 141 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 185
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-10134190No hitNo description
PROSITE profilePS5088815.796136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14138196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGQQPPTGV AEDDFFDHFF SIPSAAAGGG GGIGSGDHHP FPLALSLDAE GAGAARRLLD  60
GGHDGGGRTD RDPVQLAGLF APVFGAAAGV QPPHLRAPPP PQVFHAQPKP GEGAMAAPQP  120
QQPPAPRPKV RARRGQATDP HSIAERLRRE RIAERMRALQ DLVPNTNKTD RAAMLDEILD  180
YVKFLRLQVK VLSMSRLGGA GAVAQLVADI PISVKGEASD SGSKQQIWEK WSTDGTEKQV  240
AKLMEEDIGA AMQFLQSKAL CMMPISLAMA IYDTQHSQDG HSVKPEPNTP S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644607.11e-177transcription factor UNE12
SwissprotO227685e-78UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0E0LHV10.0A0A0E0LHV1_ORYPU; Uncharacterized protein
STRINGOPUNC07G05040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]