PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G05190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 221aa    MW: 24425.8 Da    PI: 9.5734
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G05190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-2322126199
                      EEEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesg.rsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k+l+ sdv+++    +++v+pk+ a+eh+++ +   +l+++d++g r+We+ +++   +  +++++ ++GW+ Fvka++L++gD+v+F+  +
  OPUNC07G05190.1  22 FDKKLSESDVTANggggALIVIPKSSAAEHDHVLPAIPDLRVTDLHGgRRWEFGHTWsdtDTERSHTLAAAGWSAFVKAKRLCVGDTVIFM--R 113
                      89***********8888889**********555444449*****8877*********8754444457778*********************..6 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      r ++el+v+v+rk
  OPUNC07G05190.1 114 RPGGELLVGVRRK 126
                      7**********98 PP
2Auxin_resp51.54.3e-18150220883
       Auxin_resp   8 ksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      + +F+ +Y+P+++t+eFvv++e+ve +  +++++G+R+++ ++ ++ ++r +  +Gtv++v         +S Wr+L+
  OPUNC07G05190.1 150 GHPFRATYCPWQGTAEFVVRREEVEGSPPISLTPGTRVRLLMNPDNTRRRVQpvYGTVRDVDS-------RSAWRMLE 220
                      789*******************************************99998888999988877.......89999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1917127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1617128IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-1121125No hitNo description
SMARTSM010197.5E-522127IPR003340B3 DNA binding domain
PfamPF023623.6E-1522126IPR003340B3 DNA binding domain
PROSITE profilePS5086311.51926127IPR003340B3 DNA binding domain
PfamPF065078.1E-8148219IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MHRPLPARDP VGIGGQREFC FFDKKLSESD VTANGGGGAL IVIPKSSAAE HDHVLPAIPD  60
LRVTDLHGGR RWEFGHTWSD TDTERSHTLA AAGWSAFVKA KRLCVGDTVI FMRRPGGELL  120
VGVRRKPYGG MPVGIPDKHV SDAGFYATLG HPFRATYCPW QGTAEFVVRR EEVEGSPPIS  180
LTPGTRVRLL MNPDNTRRRV QPVYGTVRDV DSRSAWRMLE V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-1222221124333Auxin response factor 1
4ldw_A2e-1222221124333Auxin response factor 1
4ldw_B2e-1222221124333Auxin response factor 1
4ldx_A2e-1222221124333Auxin response factor 1
4ldx_B2e-1222221124333Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA3BH851e-102ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0LHW61e-160A0A0E0LHW6_ORYPU; Auxin response factor
STRINGOPUNC07G05190.11e-161(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-24auxin response factor 17