PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G07160.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 222aa    MW: 25296.4 Da    PI: 11.0216
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G07160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-09146180337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.kgRtl 37 
                       WT+eEd +l++a++ + ++ W++I r ++  +Rt+
  OPUNC07G07160.1 146 IWTEEEDMKLIKAHQTYDNR-WSAIIRWLPaGRRTP 180
                      6*******************.******999766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-9144199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-10145193IPR009057Homeodomain-like
PROSITE profilePS500906.62145180IPR017877Myb-like domain
CDDcd001672.33E-5147180No hitNo description
PfamPF002497.4E-7147180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVVPATKHSW CSNHRGVPNL GCLVASIGMD PSSFRMPKRD PVTASYNSIS TVQVLPRCLN  60
NSRRKLVASS NGNLRLVKGG CGQGKRMSSD RSINFRFVIF LLGISSFLRQ YNLLLLCSLD  120
CRVLRQMLRH HGDRKWIEIA KSLPGIWTEE EDMKLIKAHQ TYDNRWSAII RWLPAGRRTP  180
CIKNHRNPTK RSLNSKQPLR KKNSEQAAPG QPSHLEEYIF SC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051972e-68AP005197.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0592C06.
GenBankAP0149632e-68AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-68CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankDQ9896282e-68DQ989628.1 Oryza sativa (indica cultivar-group) clone BAC 21O9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645922.13e-52transcription factor MYB118
TrEMBLA0A0E0LIK21e-164A0A0E0LIK2_ORYPU; Uncharacterized protein
STRINGOPUNC07G07160.11e-164(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-12myb domain protein 118