PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G09790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 268aa    MW: 28935 Da    PI: 8.5635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G09790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.3e-134997254
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                     +++ Vr  + +gr++AeI+dp    k++r++lg++++ae+Aa+a++ a ++l+
  OPUNC07G09790.1 49 RFHRVRKLP-WGRYAAEICDPA---KKARVWLGTYDSAEDAAQAYDVATRALR 97
                     567799999.**********83...36*******************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-1649113IPR001471AP2/ERF domain
PROSITE profilePS5103216.56849107IPR001471AP2/ERF domain
PRINTSPR003674.4E-65061IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-195097IPR001471AP2/ERF domain
PfamPF008471.9E-75396IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-135398IPR016177DNA-binding domain
CDDcd000182.51E-175396No hitNo description
PRINTSPR003674.4E-67288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRVRVAGEGG GDDGCSSGGE VGGRLGEIAL RPVGSGKGNY STDLGRVTRF HRVRKLPWGR  60
YAAEICDPAK KARVWLGTYD SAEDAAQAYD VATRALRPRP TSRSPSPTPS LSSITIRPTP  120
PPSPDRPPAA LASPLSRSAP GRDRCSRHGS HRRRSLTVIA TVCESSASVV EDNCTDTTAF  180
AVVLIPFQFD LNLPPGGVSV RGDEELKLTA LRLEHIRSLE KEEKEKNIWF FPSLVADMIP  240
PPILCCSCLL DLVTINVARS AYLPACCW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040461e-54AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01.
GenBankAP0058491e-54AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09.
GenBankAP0149581e-54AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-54CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LJG90.0A0A0E0LJG9_ORYPU; Uncharacterized protein
STRINGOPUNC07G09790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-18erf domain protein 9