PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G10310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 238aa    MW: 25283 Da    PI: 10.0201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G10310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-1776125355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + GVr+++ +gr++AeIrd + ng  +r+++g+f++ae Aa a+++a+++ +g
  OPUNC07G10310.1  76 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWIGTFDSAEAAAMAYDQAALSARG 125
                      57******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-2775139IPR001471AP2/ERF domain
PROSITE profilePS5103221.45675133IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2076135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-2676134IPR001471AP2/ERF domain
PfamPF008471.4E-1276125IPR001471AP2/ERF domain
PRINTSPR003677.6E-87687IPR001471AP2/ERF domain
PRINTSPR003677.6E-899115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAEHLSHAGM YIGYTADAAA SSSSSSSSSS SSSSEMLRFD TGWPDETPAP SAVAGRRRGA  60
GGDHRQGRGE RKAEAFIGVR RRPWGRFAAE IRDSTRNGAR VWIGTFDSAE AAAMAYDQAA  120
LSARGAAAAL NFPVERVRES LHALSLGAAG EGSPVLALKR RHSKRKRRKK AELLAAAATA  180
AAANATPQTR RISKSTELTS ATADEQKRFV VELEDLGAEY LEELLWLSEF NGGSGTAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2358135674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRHSKRK
2163168KRKRRK
3163169KRKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0626120.0AK062612.1 Oryza sativa Japonica Group cDNA clone:001-105-A10, full insert sequence.
GenBankAP0053250.0AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646205.11e-109ethylene-responsive transcription factor 15
TrEMBLA0A0E0LJN01e-167A0A0E0LJN0_ORYPU; Uncharacterized protein
STRINGOPUNC07G10310.11e-168(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-23ethylene response factor 1