PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G10870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 211aa    MW: 24096.9 Da    PI: 4.7457
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G10870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.57.2e-1173111543
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 
                       ++t++q+++Le++Fe++ y+  ++r +LAkklg++erq
  OPUNC07G10870.1  73 KRHTDDQIKQLESVFERCTYLGGNQRVKLAKKLGMEERQ 111
                      579***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-1052113IPR009057Homeodomain-like
SuperFamilySSF466892.27E-859111IPR009057Homeodomain-like
SMARTSM003899.7E-468121IPR001356Homeobox domain
CDDcd000868.99E-970111No hitNo description
PfamPF000463.4E-873111IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQMPMNQFRS NTRNQLIMDN GSQQQSSNLH VLDHPLASVI GVEDRVETDD AAVNYYDDGS  60
EGQDEATSNK RMKRHTDDQI KQLESVFERC TYLGGNQRVK LAKKLGMEER QMHDEHQEGM  120
WLQEENDVLH AENKVLKEAI WANICFTCGS SVVPTIPTIQ WRYLSFQNMR LADELQHATA  180
VFNMVAEDAD VDLPPVSPLT HFKGKGPYDT Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042981e-87AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBankAP0056901e-87AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBankAP0149631e-87AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-87CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LJU91e-159A0A0E0LJU9_ORYPU; Uncharacterized protein
STRINGOPUNC07G10870.11e-160(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.13e-19homeodomain GLABROUS 1