PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G10920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 203aa    MW: 23097.4 Da    PI: 10.691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G10920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.9e-152973348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd ll ++ k+ G ++W+++ar m+ +R+  +c+ rw+ +l
  OPUNC07G10920.1 29 AWTPEEDALLQRLAKENGFRRWSRVARSMP-RRSTRSCRTRWRHHL 73
                     8*****************************.***********9886 PP
2Myb_DNA-binding24.47e-0881124348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  OPUNC07G10920.1  81 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 124
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2132277IPR017930Myb domain
SMARTSM007174.0E-122675IPR001005SANT/Myb domain
SuperFamilySSF466892.5E-2228120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-192983IPR009057Homeodomain-like
PfamPF002491.3E-132973IPR001005SANT/Myb domain
CDDcd001676.77E-72958No hitNo description
PROSITE profilePS500907.36474124IPR017877Myb-like domain
SMARTSM007172.4E-478126IPR001005SANT/Myb domain
PfamPF002496.0E-681123IPR001005SANT/Myb domain
CDDcd001671.36E-481123No hitNo description
Gene3DG3DSA:1.10.10.609.1E-984123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDQGVIMATQ PPPPPPRARC VVRLKLSPAW TPEEDALLQR LAKENGFRRW SRVARSMPRR  60
STRSCRTRWR HHLARDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG RTSRVMKHRW  120
RELRRSGFPP AAAARKEQAP AMDADDMAES EVEGSDQSLP PRELHRPLAD ALASSFGSCS  180
LAHDHAMDPL AGSLALGFAC MAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-1631120695MYB3
3zqc_D2e-1631120695MYB3
3zqc_G2e-1631120695MYB3
3zqc_J2e-1631120695MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052000.0AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.11e-116transcription factor MYB73
TrEMBLA0A0E0LJV51e-144A0A0E0LJV5_ORYPU; Uncharacterized protein
STRINGOPUNC07G10920.11e-145(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-16myb domain protein 70