PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G10930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 426aa    MW: 48696.4 Da    PI: 10.2946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G10930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-132670348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT eEd ll ++ k+   ++W+++ar m+ +R++ +c++rw+ +l
  OPUNC07G10930.1 26 AWTSEEDALLQRLAKENSFRRWSRVARSMP-RRSARSCRDRWRHHL 70
                     7*****************************.***********9886 PP
2Myb_DNA-binding22.52.7e-0778121348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  OPUNC07G10930.1  78 PFTARDDDELLRLHYRLGDR-WKDIGRAVY-GRTSRVMKHRWRELR 121
                      79****************99.********9.***********9875 PP
3Myb_DNA-binding42.31.8e-13253297348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT eEd ll ++ k+   ++W+++ar m+ +R++ +c++rw+ +l
  OPUNC07G10930.1 253 AWTSEEDALLQRLAKENSFRRWSRVARSMP-RRSARSCRDRWRHHL 297
                      7*****************************.***********9886 PP
4Myb_DNA-binding22.52.7e-07305348348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  OPUNC07G10930.1 305 PFTARDDDELLRLHYRLGDR-WKDIGRAVY-GRTSRVMKHRWRELR 348
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8231974IPR017930Myb domain
SMARTSM007173.9E-112372IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-2125117IPR009057Homeodomain-like
CDDcd001672.34E-112670No hitNo description
Gene3DG3DSA:1.10.10.602.1E-172679IPR009057Homeodomain-like
PfamPF139215.7E-122781No hitNo description
PROSITE profilePS500907.24871121IPR017877Myb-like domain
SMARTSM007175.2E-475123IPR001005SANT/Myb domain
CDDcd001670.0014478120No hitNo description
Gene3DG3DSA:1.10.10.603.5E-880120IPR009057Homeodomain-like
PROSITE profilePS5129414.823246301IPR017930Myb domain
SMARTSM007173.9E-11250299IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-21252344IPR009057Homeodomain-like
CDDcd001672.34E-11253297No hitNo description
Gene3DG3DSA:1.10.10.602.1E-17253306IPR009057Homeodomain-like
PfamPF139217.2E-12254308No hitNo description
PROSITE profilePS500907.248298348IPR017877Myb-like domain
SMARTSM007175.2E-4302350IPR001005SANT/Myb domain
CDDcd001670.00144305347No hitNo description
Gene3DG3DSA:1.10.10.603.5E-8307347IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDQEIMSPSP PLPRARCVVR LKLPPAWTSE EDALLQRLAK ENSFRRWSRV ARSMPRRSAR  60
SCRDRWRHHL ARDVYHRPFT ARDDDELLRL HYRLGDRWKD IGRAVYGRTS RVMKHRWREL  120
RRSGFPGPAA AAARKEPLAM DADAVDKEDS EQESVTPPPE KQHPFTDVLA LSFASCSLVH  180
DHAMDPVAGS LALGILSSRR ADLLLQTLLS PRSSSPQAQR ESDSEVEMDQ EIMSPSPPLP  240
RARCVVRLKL PPAWTSEEDA LLQRLAKENS FRRWSRVARS MPRRSARSCR DRWRHHLARD  300
VYHRPFTARD DDELLRLHYR LGDRWKDIGR AVYGRTSRVM KHRWRELRRS GFPGPAAAAR  360
KEPLAMDADA VDMEDSEQEL VSPPPEKQRP FADVLASSFG SCSLAHDHAM DPVAGSLALG  420
LSCMAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-14273497102MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-14273497102C-Myb DNA-Binding Domain
1msf_C2e-14273497102C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052001e-151AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149631e-151AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.11e-99transcription factor MYB73
TrEMBLA0A0E0LJV60.0A0A0E0LJV6_ORYPU; Uncharacterized protein
STRINGOPUNC07G10930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-16myb domain protein 73