PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G11290.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 78aa    MW: 8973.05 Da    PI: 4.9218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G11290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-11448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+++E +l+ +a++ +G g    W+++ar +g ++t+++++ ++
  OPUNC07G11290.1  4 EWSKQENKLFEEAIAYYGEGapdLWHKVARAIGGTKTAEEVRRHY 48
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.286156IPR017884SANT domain
SMARTSM007174.4E-7154IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-11359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-5456IPR009057Homeodomain-like
CDDcd001674.14E-6448No hitNo description
PfamPF002493.3E-9448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASEWSKQEN KLFEEAIAYY GEGAPDLWHK VARAIGGTKT AEEVRRHYEI LEDDIKLIEA  60
RRVPFPKGEA SEVPDDRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-185661171RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126154e-70CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361434e-70CT836143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569502.12e-32protein RADIALIS-like 3
RefseqXP_024314815.12e-32protein RADIALIS-like 3
SwissprotQ6NNN02e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0E0LK001e-49A0A0E0LK00_ORYPU; Uncharacterized protein
STRINGOPUNC07G11290.12e-50(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.28e-22RAD-like 6