PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G12950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 417aa    MW: 45039.1 Da    PI: 5.8149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G12950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-30155211259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++++i+Y+g+H+he
  OPUNC07G12950.1 155 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIIQIIYRGQHTHE 211
                      8****************************************.***************8 PP
2WRKY103.31.3e-32323381159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  OPUNC07G12950.1 323 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 381
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-27149213IPR003657WRKY domain
SuperFamilySSF1182901.7E-24152213IPR003657WRKY domain
SMARTSM007741.7E-32154212IPR003657WRKY domain
PfamPF031069.9E-23155211IPR003657WRKY domain
PROSITE profilePS5081123.238155213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-34310383IPR003657WRKY domain
SuperFamilySSF1182903.66E-29316383IPR003657WRKY domain
PROSITE profilePS5081134.762318383IPR003657WRKY domain
SMARTSM007742.3E-38323382IPR003657WRKY domain
PfamPF031063.9E-25324380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAGGGSLWVP PPPSSSSSEG GFPELPVAAV EGLLDAPFPS SGGGGGGWPP LSGTAVLLGY  60
PQGNFQIFPE QDLVPLTAQD VHSKCITLGR AENPSFIPLV TSALVSQHTG SSSVNVTPLQ  120
EILTLPSQIS NVNTESIGVL QGLPASSIVL DRPADDGYNW RKYGQKAVKG GEYPKSYYKC  180
THLNCLVRKN VEHSADGRII QIIYRGQHTH ERPSKRRFKD CGGISDDLDD FSGTTGTSVR  240
SQPDYDDYCR KPIIPSGTMV GPLVKKIEDG DDQFSGSSDN QDEHDDEVRT ADGASGDASA  300
NERNVPAPGQ KIIVSTTSEV DLLDDGYRWR KYGQKVVKGN PYPRSYYKCT YLGCDVKKQV  360
ERSVEEPNAV ITTYEGKHIH DVPAARNKSH VVANASLLQN TKSNTYCTEQ AYTTITC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34155384878Probable WRKY transcription factor 4
2lex_A3e-34155384878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0E0LKK40.0A0A0E0LKK4_ORYPU; Uncharacterized protein
STRINGOPUNC07G12950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-76WRKY DNA-binding protein 3