PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G13080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 435aa    MW: 45619.4 Da    PI: 6.8821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G13080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.6e-06101121323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C  Cgk Fs++ +L  H+r+H
  OPUNC07G13080.1 101 CRECGKLFSSWRSLLGHMRRH 121
                      ********************9 PP
2zf-C2H216.23e-05305327123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cgk+Fs+   L  H  +H
  OPUNC07G13080.1 305 YECPGCGKVFSSYQALGGHRASH 327
                      99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.34E-101436No hitNo description
PfamPF139123.5E-51436IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7831441IPR007087Zinc finger, C2H2
SMARTSM003550.111436IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-51437IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576677.34E-1094121No hitNo description
PROSITE profilePS5015710.30599122IPR007087Zinc finger, C2H2
SMARTSM003550.01199121IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-4100121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-5101121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139121.1E-11304329IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.616305332IPR007087Zinc finger, C2H2
SMARTSM003550.031305327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDAVGVELSG RVMHRCRVCG KGFSCGRSLG GHMRSHISSG EAEAAELGDG GRCGSNGGVV  60
GYGLRENPKK TRRLSEFDGD CDGDGDEEVE EGGDGGELRA CRECGKLFSS WRSLLGHMRR  120
HASGGGRDHH DDDDDVDMVE EFGSEEAVEE EIVAPAAGVT VIAAPPRRRR RSMRVAAPAP  180
APPRPVLGGF EKEQEDVALG LLMLSRDTGL WRSPVKAETF EKPEQKKKKA TAKHPTSLPR  240
NGYGDGYNSD DDSALLQYGG AKGSSGGGGD VAKRRKRRAS YCAPNSISPK QQQQRAAAPA  300
KRTRYECPGC GKVFSSYQAL GGHRASHKRI NTSCSAPKVS PAAAAAAAPA PEPSSETYPS  360
LSILSPSASP DSVAAGIGDS KTKRSSAEKF GGACSDELYA SSSGNAELEL EEHSPAAAAA  420
GFLDLNYPPA SSEVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361330.0CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.11e-171uncharacterized protein LOC107278250
TrEMBLA0A0E0LKL80.0A0A0E0LKL8_ORYPU; Uncharacterized protein
STRINGOPUNC07G13080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.19e-11C2H2-like zinc finger protein