PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G13140.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 315aa    MW: 33771.3 Da    PI: 5.4256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G13140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000199121123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  OPUNC07G13140.1  99 FPCHLCNKEFGSRKAVHGHMRVH 121
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-596122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.34E-698121No hitNo description
SMARTSM003550.006799121IPR015880Zinc finger, C2H2-like
PfamPF139120.001799123IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-4155180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9156180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158180IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-6193220No hitNo description
SMARTSM003551.6198220IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-8198222IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891198225IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGNNDSSSN DDSLHRRAEE IEEGEIGPVD GGYYDSGSET EEEEEEAMRP ATCKRRRLED  60
ILELPSPTPS SSGSEGTISD RDHGGDDAAR VAARREAPFP CHLCNKEFGS RKAVHGHMRV  120
HQAKEKEPPS SPQPTVAPAV QHLAPLPGAY RSGGPYRCKY EGCGMEYKMH QGLGGHVAGH  180
INRDKLAAAG AGKPEGKHPC NVCGKEYLTG VALGGHKRKH YKKDLDLTLS LAPPPTPAPA  240
PVAIAAAAAL PPAETEAEVA EHGDGAEPVL ATPPTGVTRN AVRIFGVDVE KPVDNAEEQD  300
ERLKKDQKDR HTEED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038401e-106AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0042301e-106AP004230.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ2013_G04.
GenBankAP0149631e-106AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882681.12e-99zinc finger protein squeeze-like
TrEMBLA0A0E0LKM40.0A0A0E0LKM4_ORYPU; Uncharacterized protein
STRINGOPUNC07G13140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-12C2H2-like zinc finger protein