PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G14360.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 219aa    MW: 22139.3 Da    PI: 10.5196
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G14360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP104.29.8e-33110190178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE...EEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgl...eqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C +dlsea +y+rrhkvC++hsk pvvlv+gl   +++ C    +fhel+efD++krsCrrrLa+hnerrrk++a
  OPUNC07G14360.1 110 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLpptKKKICSDHDQFHELTEFDDAKRSCRRRLAGHNERRRKSAA 190
                      6***********************************96444899**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-25103175IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.863108188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-29109192IPR004333Transcription factor, SBP-box
PfamPF031106.4E-24111187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDRKDKARKN SSSSSSAASM AALAAAAAAG DGGAALPSPM EEDKKPRLAA SSLVPVAGGV  60
GGGSSSSASA AAGASSSSSS SSVAAAARRG AGRAGGGAPA SGGGGGGGPR CQVERCGVDL  120
SEAGRYNRRH KVCQTHSKEP VVLVAGLPPT KKKICSDHDQ FHELTEFDDA KRSCRRRLAG  180
HNERRRKSAA DTAHGENCRH ADQDGRSHQG TGNPPFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-27102187184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051861e-155AP005186.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0430F03.
GenBankAP0149631e-155AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-155CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankLT1599501e-155LT159950.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP507.
GenBankLT1599511e-155LT159951.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP678.
GenBankLT1599521e-155LT159952.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP563.
GenBankLT1599531e-155LT159953.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP553.
GenBankLT1599541e-155LT159954.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP112.
GenBankLT1599551e-155LT159955.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP07.
GenBankLT1599561e-155LT159956.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar HP111.
GenBankLT1599571e-155LT159957.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar HP135.
GenBankLT1599581e-155LT159958.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar HP163.
GenBankLT1599591e-155LT159959.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP16.
GenBankLT1599601e-155LT159960.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP81.
GenBankLT1599611e-155LT159961.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP39.
GenBankLT1599621e-155LT159962.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP26.
GenBankLT1599631e-155LT159963.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP30.
GenBankLT1599641e-155LT159964.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GLA4.
GenBankLT1599651e-155LT159965.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP538.
GenBankLT1599661e-155LT159966.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP531.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645415.15e-75squamosa promoter-binding-like protein 13
SwissprotQ6Z4615e-76SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A0E0LL211e-152A0A0E0LL21_ORYPU; Uncharacterized protein
STRINGOPUNC07G14360.11e-153(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-29squamosa promoter binding protein-like 4