PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G16570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 571aa    MW: 64562.3 Da    PI: 6.2509
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G16570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.81.4e-1292025702373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cAea+s++ + + ++l+++++  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P++kf++
  OPUNC07G16570.1 202 KQLLTRCAEALSEDRTDEFHKLVQEVRGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICPYFKFGY 292
                      689*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l     +
  OPUNC07G16570.1 293 MAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDIVGKMLKSMSEEFKIPLEFTPL-PVYAT 385
                      *******************************************************999999**************************6.77788 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf e+++yysa+f+s++a+lpr+++e
  OPUNC07G16570.1 386 QVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMDYYSAMFESIDANLPRDNKE 479
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGF+p+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  OPUNC07G16570.1 480 RISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 570
                      *************************************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.334175552IPR005202Transcription factor GRAS
PfamPF035144.9E-127202570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDLHQLLKYR LTGANVVYEI PTENNLQNSP WQANPLKYEF SDSPYTPLSS QFECDNLSAL  60
TNTPDNQSST ETISAQPISP LEADSSYRQA GILLRENIQV GADPLYATSR HNMQHALREI  120
ETVLMAPDTD DATTSTKHEF EEIKPAQLVR QRSRTWSHES RQPLPGVGRS QFASGGYPTA  180
SYEFRPEKRQ RELREDPQII VKQLLTRCAE ALSEDRTDEF HKLVQEVRGV VSINGEPIQR  240
LGAYLLEGLV ARHGNSGTNI YRALKCREPE SKELLSYMKI LYNICPYFKF GYMAANGAIA  300
EALRTENNIH IIDFQIAQGT QWITLIQALA ARPGGPPHVR ITGIDDPVSE YARGEGLDIV  360
GKMLKSMSEE FKIPLEFTPL PVYATQVTKE MLEIRPGEAL AVNFTLQLHH TPDESVDVNN  420
PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FLMRFGETMD YYSAMFESID ANLPRDNKER  480
ISVEQHCLAK DIVNIIACEG KDRVERHELL GKWKSRLTMA GFRPYPLSSY VNSVIKKLLA  540
CYSDKYTLEE KDGAMLLGWK NRKLISASAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-701855703378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042350.0AP004235.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0006G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646796.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0E0LLW10.0A0A0E0LLW1_ORYPU; Uncharacterized protein
STRINGOPUNC07G16570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]