PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G16850.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 781aa    MW: 87544.9 Da    PI: 6.4211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G16850.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-0563102555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + e+ErrRR r+N  ++ Lr ++ k            ++L  A+e+Ik+Lq
  OPUNC07G16850.2  63 NLEAERRRRGRLNGNIFALRAVMSKE-----------ATLSDAIEHIKNLQ 102
                      5689*****************99886...........6***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-957119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-564112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-564107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.10.101.2E-100335660IPR011989Armadillo-like helical
PfamPF032241.2E-87337651No hitNo description
SuperFamilySSF483719.15E-122341771IPR016024Armadillo-type fold
SMARTSM001855.2524569IPR000225Armadillo
SMARTSM00185110570611IPR000225Armadillo
PfamPF116986.8E-38658770IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene3DG3DSA:1.25.40.1501.1E-38672771IPR011987ATPase, V1 complex, subunit H, C-terminal
SMARTSM0018581731771IPR000225Armadillo
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0000325Cellular Componentplant-type vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0046961Molecular Functionproton-transporting ATPase activity, rotational mechanism
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MPRRARARGS GGGGGEEVKV EDDFVDSVLN FGGGGREEDG DDGEEQQQQA AAAAVGKEFK  60
SKNLEAERRR RGRLNGNIFA LRAVMSKEAT LSDAIEHIKN LQNEALELQR QLADSPGEAW  120
EKQGSASCSE SFVPTENTHY QGQVELISLG SCKYNLKIFW TKRAGLFTKV LEALCSYKVQ  180
VLSLNTISFY GYAESFFNIE VKGEQDVVMV ELRSLLSSIV ESKTEGEKER KTNNLAGNSR  240
CPTPPPPVHP TAETPPERLL LLLLLLLRPP AAAAALHRDE ETRREQQTIE EEDICFEIRG  300
DRWKAGAAGH DSSTWPCGRG THTHKDSATR GIAAMDHAEL TTEQVLKRDI PWESYMANKL  360
ISGTCLQLLR RYDHKPESQR GPLLDEDGPS YVRVFLNILR NISKEDTVEY VLALIDEMLA  420
VNPKRAALFY DKSLSGEDIY DPFLSNWFVQ EKSCKILTQI ISARPKMQNG IVPNGEASNS  480
KSKLTSTQDV LRGLVDWLCS QLRNPTHPNC SVPTAMHCLA TLLREQYVRA LFVQADGVKL  540
LIPLISPAST QQSIQLLYET CLCIWLLSFY DAAVDYLSTT RVMPRLVEVV KGSTKEKVVR  600
VVIMSIRNLL AKGAFAAQMI DLGLPHIVQN LKAQAWTDED LLDALNQLEI GLKDNLKKLS  660
SFEKYKQQVL LGHLDWSPMH KDPSFWRENI NNFEENDFQI LRVLMTIIDT SADTTALAVA  720
CYDLSQFLQY HPSGRIVVAD LKAKDRVMKL MNHENAEVRK NALLCVQRLF LGAKYASFLQ  780
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ho8_A6e-18534770222475VACUOLAR ATP SYNTHASE SUBUNIT H
3j9t_P7e-18534770220473V-type proton ATPase subunit H
3j9u_P7e-18534770220473V-type proton ATPase subunit H
3j9v_P7e-18534770220473V-type proton ATPase subunit H
5bw9_h7e-18534770220473V-type proton ATPase subunit H
5d80_h7e-18534770220473V-type proton ATPase subunit H
5vox_P7e-18534770220473V-type proton ATPase subunit H
5voy_P7e-18534770220473V-type proton ATPase subunit H
5voz_P7e-18534770220473V-type proton ATPase subunit H
6o7v_P7e-18534770220473V-type proton ATPase subunit H
6o7w_P7e-18534770220473V-type proton ATPase subunit H
6o7x_P7e-18534770220473V-type proton ATPase subunit H
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0677140.0AK067714.1 Oryza sativa Japonica Group cDNA clone:J013120K21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647646.10.0probable V-type proton ATPase subunit H
SwissprotQ84ZC00.0VATH_ORYSJ; Probable V-type proton ATPase subunit H
TrEMBLA0A0E0LLZ60.0A0A0E0LLZ6_ORYPU; Uncharacterized protein
STRINGOPUNC07G16850.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP491455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-15bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]