PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC07G18300.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 113aa MW: 12011.6 Da PI: 6.7314

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G18300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	59.7	1.2e-18	11	55	6	49
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtslls.vn 49 e++ yvqC+fC+t+l+v vP +s+++vv+v+CGhC+ +ls vn OPUNC07G18300.1 11 LRERLGYVQCSFCTTVLLVRVPCNSVLRVVAVQCGHCSGILSaVN 55 5799*************************************9344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.4E-17	12	57	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MSSARHHCSG LRERLGYVQC SFCTTVLLVR VPCNSVLRVV AVQCGHCSGI LSAVNLPPPP 60 ASVKLPPQEL DVGPSPREYS DESSGDDREG DGKDDAPAAT VVANKRTCPA VYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274019	1e-80	AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882678.1	6e-47	protein YABBY 7 isoform X3
Swissprot	A2PZN8	1e-47	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A0E0LMG4	2e-76	A0A0E0LMG4_ORYPU; Uncharacterized protein
STRING	OPUNC07G18300.1	3e-77	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	4e-11	YABBY family protein