PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G18920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 606aa    MW: 64674.8 Da    PI: 6.2032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G18920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-064264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F r  nL+ H r H
  OPUNC07G18920.1 42 FVCEVCGKGFQRDQNLQLHRRGH 64
                     89*******************88 PP
2zf-C2H214.50.0001121142223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk++  + +Lk H +t+
  OPUNC07G18920.1 121 ACQRCGKRYAVQADLKAHAKTC 142
                      6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-84164No hitNo description
PROSITE profilePS5015711.6354264IPR007087Zinc finger, C2H2
SMARTSM003550.0144264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-54264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003558585115IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5108141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-8115140No hitNo description
SMARTSM00355140120140IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704120148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEASAPAAAP VVKKKRNLPG TPDPDAEVIA LSPGTLLATN RFVCEVCGKG FQRDQNLQLH  60
RRGHNLPWRL RQRGPGAAPP RRRVYVCPEP GCVHHNPARA LGDLTGIKKH FCRKHGEKRW  120
ACQRCGKRYA VQADLKAHAK TCGTREYRCD CGTLFTRRDS FVTHRAFCGA LVEETGRVLA  180
VPAPPSPHPP DLEAEENVDK DKEEVKEKEL EENEDSPVAE VDEPQPSQAV AEAPQQSAPS  240
PPTPPPILQE HPQPVVAVVP NVDEQEVVNE PAVIAKIEVE DERDEDVCFQ EADRFKDAKL  300
EDSNLLDNDT PMLPCFIPSP SEAIGTDGSS TSCGTGSSVT NAIAPATTTS TFAGLFASVT  360
TSSTPQSRSL RDLIGVDPTF LCLAIGAPSS LFPQTNASDP CSFAPPPAPH MSATALLQKA  420
AEVGASQSSS SFLKEFGLAA STSSSPPSKL SQGRFTTGNT PTSHPHPHPH LHPSQGRFMD  480
NVPPPPSPAK LPHRMFTDNS VQQWHHRSNQ QMEMEPGPML PGGLGLGLTY DSGNSGLPDL  540
MMGPSALYGP KPATLDFLGL GIGGTMGGST ANGGLPALMV GGELDMGSAQ APWEEAKRKT  600
NGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-30116178365Zinc finger protein JACKDAW
5b3h_F3e-30116178365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041850.0AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12.
GenBankAP0042760.0AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0protein indeterminate-domain 1
TrEMBLA0A0E0LMP00.0A0A0E0LMP0_ORYPU; Uncharacterized protein
STRINGOPUNC07G18920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-90C2H2 family protein