PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G18930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 240aa    MW: 26102.2 Da    PI: 7.5706
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G18930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-1959112356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq+e Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  OPUNC07G18930.1  59 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 112
                      45589***********************************************99 PP
2HD-ZIP_I/II116.31.8e-3759149292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++Le+ev +L+e+l 
  OPUNC07G18930.1  59 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 149
                      9**************************************************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.29354114IPR001356Homeobox domain
SuperFamilySSF466891.0E-1656113IPR009057Homeodomain-like
SMARTSM003899.7E-1757118IPR001356Homeobox domain
CDDcd000867.89E-1559114No hitNo description
PfamPF000464.0E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-1859112IPR009057Homeodomain-like
PRINTSPR000311.8E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.8E-594110IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDRYGEKQQQ MFASYVDASL LAASGAVQAE RPRARRRRRR GARCGGGGGG GEVDGGDPKK  60
RRLSDEQVEM LELSFREERK LETGRKVHLA SELGLDPKQV AVWFQNRRAR HKSKLLEEEF  120
SKLKHAHDAA ILHKCHLENE VLRLKERLVV AEEEVRRLRS AAGSHTASGE GGDIMGLGGG  180
ACVAGSPSSS FSTGTCQPQS FGCGGGGGDH LGDDDLVYVP EYGGYADNSV VEWFSLYGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13039RPRARRRRRR
23442RRRRRRGAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218890.0AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646179.11e-123homeobox-leucine zipper protein HOX14
SwissprotA2YN171e-124HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
TrEMBLA0A0E0LMP11e-173A0A0E0LMP1_ORYPU; Uncharacterized protein
STRINGOPUNC07G18930.11e-174(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-32homeobox protein 40