PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G19280.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 596aa    MW: 64188.8 Da    PI: 5.7412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G19280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.21.2e-951885952374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+
  OPUNC07G19280.1 188 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTVSGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFG 280
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgv 174
                      h++aN aIle++ +         +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gv
  OPUNC07G19280.1 281 HVAANGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGV 374
                      **********8754434455567999************************8889**********988889999999****************** PP

             GRAS 175 pfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............ 251
                      pf+f++++++ +l++l+l++L++++     alaVn+v +l  ++  ++  + +rd++   +++l P+vv+vve+ead+   +            
  OPUNC07G19280.1 375 PFRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--PGRAR-RRDAFAASLRRLDPRVVTVVEEEADLvA-Sdpdassteeggd 464
                      *******8888**************888889************9..55555.59***********************954.44899******** PP

             GRAS 252 ...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                          Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et++ W +r+++aGF+pv++se++a+++++llr
  OPUNC07G19280.1 465 teaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAAAWARRMRSAGFSPVAFSEDVADDVRSLLR 557
                      ****************************************.***************************************************** PP

             GRAS 343 kvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      ++  +g+++ +         + ++l Wk++pLv++SaWr
  OPUNC07G19280.1 558 RYR-EGWSMRDAgtddsaaGAGVFLAWKEQPLVWASAWR 595
                      **9.88888844444455355566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.243161569IPR005202Transcription factor GRAS
PfamPF035144.0E-93188595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDTLFRLVSL QAASEQQQQQ SASYNSRSTT SSGSRSSSHQ TNASYSYYHH SSNSGGGGGQ  60
YYYGGQQPPP SQYYYLEPYQ EECGNAPHHQ LYMDEDFSSS SSSRHFHHSH GAPVQQPPAS  120
STPTGTAPTP PLSTSSTAAG AGHGLFEAAD LSFPPDLNLD FSSPASSSGG GTASSGAVGG  180
GGGGRWASQL LLECARSVAA RDSQRVQQLM WMLNELASPY GDVEQKLASY FLQGLFARLT  240
VSGPRTLRTL AAASDRNTSF DSTRRTALRF QELSPWSSFG HVAANGAILE SFLEVAAAAS  300
SETQRFHILD LSNTFCTQWP TLLEALATRS ADETPHLSIT TVVSAAPSAP TAAVQRVMRE  360
IGQRMEKFAR LMGVPFRFRA VHHSGDLAEL DLDALDLREG GATTALAVNC VNSLRGVVPG  420
RARRRDAFAA SLRRLDPRVV TVVEEEADLV ASDPDASSTE EGGDTEAAFL KVFGEGLRFF  480
SAYMDSLEES FPKTSNERLA LERGAGRAIV DLVSCPASES MERRETAAAW ARRMRSAGFS  540
PVAFSEDVAD DVRSLLRRYR EGWSMRDAGT DDSAAGAGVF LAWKEQPLVW ASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15918259682474Protein SHORT-ROOT
5b3h_B1e-15918259628420Protein SHORT-ROOT
5b3h_E1e-15918259628420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054370.0AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645491.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A0E0LMT50.0A0A0E0LMT5_ORYPU; Uncharacterized protein
STRINGOPUNC07G19280.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-131GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]