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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC07G19470.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 467aa MW: 50119 Da PI: 5.402 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC07G19470.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 303.3 | 5.7e-93 | 72 | 464 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevsP 89
++lL++cA+a++++d++l+q++L+ l+++a dgd++qRl+a f+ AL +r +r ++ +ka+++ ++ + ++++++a++l f +++P
OPUNC07G19470.1 72 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVSRASR--TGACKAVTAAVADAVEsaalHVHRFTAVELasFIDLTP 163
79***************************************************9..44454443333322221234666666666689****** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
+++f++ +aN aIleaveg vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ + + s ++ee+g +L +fA++ +++++f+
OPUNC07G19470.1 164 WHRFGYTAANAAILEAVEGFPVVHIVDLGTTHCMQIPTLIDMLASRAEGPPILRLTVADVAPSApppaLDMSYEELGAKLVNFARSRNMSMDFR 257
*********************************************************9886666788778899********************* PP
GRAS 180 vl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles........erdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
v+ +++ +++l++++L + gEal+Vn+++ lh+++de++ + s r+ +Lk ++ l+P++vvvv+++ad ++++ + r+
OPUNC07G19470.1 258 VVptspadaLTSLVDQLRVQQLVSDGGEALVVNCHMLLHTVPDETAGSVSltaqppvsLRTMLLKSLRALNPTLVVVVDEDADFTAGDVVGRLR 351
**887666555566677777777777****************99877766665666667899******************************** PP
GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
a+++ + +d++++ lp+ se+r+++E+e +g++++nv+a+eg er er+e +W +r+++aGF++++++e+aa ++k++l++++ g+ ++
OPUNC07G19470.1 352 AAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERLERQEDRLRWGQRMRSAGFRAAAFGEEAAGEVKAMLNEHA-AGWGMK 443
******************************.********************************************************.889999 PP
GRAS 353 eesgslvlgWkdrpLvsvSaW 373
e++ lvl+Wk++++v++SaW
OPUNC07G19470.1 444 REDDDLVLTWKGHNVVFASAW 464
********************* PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MMQFTHTAPP PPPLHPNGHG LGLGLYLDVG ATRGGGARPW SSSTLGGSSF PSSAAATSKI 60
SLGNLNSTSC MEQLLVHCAN AIEANDATLT QQILWVLNNI APADGDSNQR LTAAFLCALV 120
SRASRTGACK AVTAAVADAV ESAALHVHRF TAVELASFID LTPWHRFGYT AANAAILEAV 180
EGFPVVHIVD LGTTHCMQIP TLIDMLASRA EGPPILRLTV ADVAPSAPPP ALDMSYEELG 240
AKLVNFARSR NMSMDFRVVP TSPADALTSL VDQLRVQQLV SDGGEALVVN CHMLLHTVPD 300
ETAGSVSLTA QPPVSLRTML LKSLRALNPT LVVVVDEDAD FTAGDVVGRL RAAFNFLWIP 360
YDAVDTFLPK GSEQRRWYEA EVGWKVENVL AQEGVERLER QEDRLRWGQR MRSAGFRAAA 420
FGEEAAGEVK AMLNEHAAGW GMKREDDDLV LTWKGHNVVF ASAWAPS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003750 | 0.0 | AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05. |
| GenBank | AP005149 | 0.0 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. |
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
