PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G19500.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 201aa    MW: 20653.3 Da    PI: 9.1033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G19500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000624264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F +   L  H  +H
  OPUNC07G19500.1 42 FRCSLCGKAFASYQALGGHKASH 64
                     89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124166IPR007087Zinc finger, C2H2
SMARTSM003550.0264264IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.1E-94264No hitNo description
PROSITE profilePS5015710.8034269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SuperFamilySSF576679.1E-9103130No hitNo description
PfamPF139122.3E-7107130IPR007087Zinc finger, C2H2
SMARTSM003554.6108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDQGEGGGGG GDLISLCVMA LAAATRGERT ALAPPPELEL HFRCSLCGKA FASYQALGGH  60
KASHRKPATS AAAAALGPPR AHRDVVVAAP ASSGGAAAAS ETDGRRRHVC SLCRRGFATG  120
QALGGHKRFH YLHGPSMSAT VSSAATTASV GGFDLNVAPV KEIAGEQRCG EEADGDKAES  180
PSPAKKPRRR QDEILHVSMK Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1113011e-161AK111301.1 Oryza sativa Japonica Group cDNA clone:002-181-B04, full insert sequence.
GenBankAP0037501e-161AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0149631e-161AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646226.15e-51zinc finger protein 36-like
TrEMBLA0A0E0LMV91e-141A0A0E0LMV9_ORYPU; Uncharacterized protein
STRINGOPUNC07G19500.11e-142(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-20salt tolerance zinc finger