PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G19760.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 320aa    MW: 34285.8 Da    PI: 6.053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G19760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  OPUNC07G19760.1 100 FPCHLCNKEFGSRKAVHGHMRVH 122
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-597125No hitNo description
PfamPF139120.0043100124IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.157100127IPR007087Zinc finger, C2H2
SMARTSM003550.0067100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM0035519163187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SuperFamilySSF576675.77E-5201229No hitNo description
PfamPF139124.8E-8204228IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891204231IPR007087Zinc finger, C2H2
SMARTSM003551.6204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEGNNSSSND SLHSRRAEEI EEGEICNPGG GGGYYDSGSE TEEEEEEAMR PETCKRRRLE  60
YILELPSPTP SSSGSEGTIS DRDHGGDDAA PVAARREASF PCHLCNKEFG SRKAVHGHMR  120
VHQAKEKEPP SSLHHAPPPQ PTTAPAVQHL APLPGAYRSG GPYRCKYECC GMEYKTHQGL  180
GGHVAGHINR DKLAAGAGKP EGKHPCNVCG KEYLTGVALG GHKRKHYKKD LDLTLSLAPP  240
PTSAPAPAAI AAAALPPAET EAEVAEHGDG AEPVPATPAT GVRRNAVRIF GVDVEKPVDN  300
AEEQDERLKK DQKDRHTEED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126154e-73CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882681.15e-99zinc finger protein squeeze-like
TrEMBLA0A0E0LMY80.0A0A0E0LMY8_ORYPU; Uncharacterized protein
STRINGOPUNC07G19760.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-09C2H2 family protein