PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC07G21080.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1008aa MW: 113664 Da PI: 7.2393

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G21080.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.2	7.9e-15	21	73	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A+++gLt +qV++WF+ rR ke++ OPUNC07G21080.2 21 TKKSPLQIQMLERFYSEVQYPQSEDIAEYASSVGLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-15	12	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.111	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-13	16	79	IPR009057	Homeodomain-like
SMART	SM00389	3.5E-15	16	78	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-12	21	73	IPR001356	Homeobox domain
CDD	cd00086	1.10E-8	21	64	No hit	No description
Pfam	PF15612	1.7E-5	512	543	IPR028942	WHIM1 domain
Pfam	PF15613	6.2E-11	635	706	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MAAVRQMAAN GLAAKRENSG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA SSVGLTYNQV 60 RIWFKERRRK ERREMESLGA HMEKQLSARS NGFRCSSSRR ETHTPITSSV SQGLYPEENT 120 TDYHFYQNQR VIKKRKIVEP TTQRSSLPCG DSGPVRKHGV GKGLMTVWHA MYSHGSKIQD 180 GSNFIDETGC LRSLRPLDDC GRIEDCDDGK LIQKKVLARK KVDKRTRPPS NKRKVPCSRV 240 TAPKKHPPME CHLSVDESQS SVLQANQVTL VDDEELELRE LQAGPNPLRC SAHLSSSGRH 300 GCPLCKDLLS RFPPSSVKMK QPFSTRPWES SPEMVKKLFQ VREQEFDMNF WIKSLNSLTW 360 VEILRQEKNQ MVKYGLRPRT LKGELFALLS KKGSGGLKVS ELAKSPEIVD LNISSTEVEQ 420 LIYSTLSSDI TLFEKIAPSA YRLRVDPRIK GKEDSGSDTE DCGSVDDDSG ADESDGSHEM 480 SFSEHEHRIL RRKPKNGYEN VNRCSEIDES YSGERWLLGL MEGEYSDLSI DEKLDCLVAL 540 MDVVSGADSA PRLEEPPRVV PSILRAQPHV SGGKIKKSTR NICQSSDECF NTSGSMYGLD 600 SSMHEQSRSL RSRDYVAYSG RNDSSTGIAH QPQVVLLGSD RRYNNYWLFL GPCRTDDPGH 660 RRVYFESSED GHWEVIDSPQ ELLSLLASLD SRGTREAYLL ASMKKRQTCL FEAMKKHYEN 720 RDAVQPAMPS DTSHSETSSG DGASPKLSSG DGASPTSDID NASVPTNPAE NIINASSAIA 780 IEVGRRGDEK MLKWERSQAF DKWIWTSFYS CLTAVKCGKK SFKESLVRCE SCHDLYWRDE 840 KHCRICHSTF EVSFDLEERY AIHVATCRDP EDVYDVPNHK VLPSQLQALK AAIHAIEAHM 900 PEAAFAGLWM KSSHKLWVKR LRRTSSLAEL LQVLVDFVGA MDEDWLYKSS SSVSFCSYLD 960 DIVIYFQTMP QTTSAVALWV VKLDALITPY LERADSDRAL GKENASMR

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MAAVRQMAAN GLAAKRENSG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA SSVGLTYNQV  60
RIWFKERRRK ERREMESLGA HMEKQLSARS NGFRCSSSRR ETHTPITSSV SQGLYPEENT  120
TDYHFYQNQR VIKKRKIVEP TTQRSSLPCG DSGPVRKHGV GKGLMTVWHA MYSHGSKIQD  180
GSNFIDETGC LRSLRPLDDC GRIEDCDDGK LIQKKVLARK KVDKRTRPPS NKRKVPCSRV  240
TAPKKHPPME CHLSVDESQS SVLQANQVTL VDDEELELRE LQAGPNPLRC SAHLSSSGRH  300
GCPLCKDLLS RFPPSSVKMK QPFSTRPWES SPEMVKKLFQ VREQEFDMNF WIKSLNSLTW  360
VEILRQEKNQ MVKYGLRPRT LKGELFALLS KKGSGGLKVS ELAKSPEIVD LNISSTEVEQ  420
LIYSTLSSDI TLFEKIAPSA YRLRVDPRIK GKEDSGSDTE DCGSVDDDSG ADESDGSHEM  480
SFSEHEHRIL RRKPKNGYEN VNRCSEIDES YSGERWLLGL MEGEYSDLSI DEKLDCLVAL  540
MDVVSGADSA PRLEEPPRVV PSILRAQPHV SGGKIKKSTR NICQSSDECF NTSGSMYGLD  600
SSMHEQSRSL RSRDYVAYSG RNDSSTGIAH QPQVVLLGSD RRYNNYWLFL GPCRTDDPGH  660
RRVYFESSED GHWEVIDSPQ ELLSLLASLD SRGTREAYLL ASMKKRQTCL FEAMKKHYEN  720
RDAVQPAMPS DTSHSETSSG DGASPKLSSG DGASPTSDID NASVPTNPAE NIINASSAIA  780
IEVGRRGDEK MLKWERSQAF DKWIWTSFYS CLTAVKCGKK SFKESLVRCE SCHDLYWRDE  840
KHCRICHSTF EVSFDLEERY AIHVATCRDP EDVYDVPNHK VLPSQLQALK AAIHAIEAHM  900
PEAAFAGLWM KSSHKLWVKR LRRTSSLAEL LQVLVDFVGA MDEDWLYKSS SSVSFCSYLD  960
DIVIYFQTMP QTTSAVALWV VKLDALITPY LERADSDRAL GKENASMR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKERRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0E0LNF8	0.0	A0A0E0LNF8_ORYPU; Uncharacterized protein
STRING	OPUNC07G21080.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-139	Homeodomain-like transcriptional regulator