PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G22140.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 327aa    MW: 35587.4 Da    PI: 9.6959
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G22140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.74.2e-3431130297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+
  OPUNC07G22140.1  31 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGNAFSFRSPHEQAIFEI 124
                      79************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  OPUNC07G22140.1 125 ARNIWR 130
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-3032129IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAPAAGGGGG SGSVGGVGSS SGGGGGERRP LFQRLWTEED EIVILRGFAE FTAARGTAFA  60
SHQYDTDPFY EDMRGRLQLG FSKSQLVEKL RRLKRKYRNC VSRLRGSGNA FSFRSPHEQA  120
IFEIARNIWR PTNKHGRDGD SDDEDATAVT PAAIPVNTSP NGEVKSPTSG RQRRRRRGGD  180
FAAAPATAPA TTNMVQPLQP VQVPVSVPVK MDDTLPPLSQ NTMPITVTME GSEPLRLPVM  240
PPQSAVLDAD KSCLTPLFKE MVRAVINIGS NPFGAQMPEP PHGLPMEGEK WRKQRILELE  300
VYLKRIELLQ DQVKATLEEL KSSAPGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037490.0AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.10.0probable transcription factor At5g28040
TrEMBLA0A0E0LNT40.0A0A0E0LNT4_ORYPU; Uncharacterized protein
STRINGOPUNC07G22140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-35DNA-binding storekeeper protein-related transcriptional regulator