PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G24010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 392aa    MW: 41690.4 Da    PI: 5.0822
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G24010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-052969337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                     +r+C+ ++  ++  fC+ +   lC  C  + H g       H
  OPUNC07G24010.1 29 ARCCDFCGGLPAVVFCRADTARLCLPCDRHVH-GantvstrH 69
                     689***************************99.434555555 PP
2CCT62.81e-21351391343
              CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+
  OPUNC07G24010.1 351 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKS 391
                      5689***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-102774IPR000315B-box-type zinc finger
PROSITE profilePS501199.672774IPR000315B-box-type zinc finger
CDDcd000211.98E-73274No hitNo description
PROSITE profilePS5101714.932349391IPR010402CCT domain
PfamPF062031.7E-16351391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MARDDEQQKA SKKAVSGVDG GAPVAASAAR CCDFCGGLPA VVFCRADTAR LCLPCDRHVH  60
GANTVSTRHA RAPLCAACRA APAAVRRDAA RFLCSNCDFD ERRRISIGCD GGGDGDLPLH  120
DRATVEGYTG CPSIGELAAI LGVVGGGDSD KPADDGWWSA SWEEAPQVLS MDDIIVPTTS  180
CHGLQPLLTP SSPENRSSPD NEELDGEVLR QLGELAKSEA AAATFVAGDQ LASWASPEFT  240
SGHGDFCIEA ASHEAASTTV PSCENETWMS ADCTDPTDAS KTEIAREEVP PSSSAEPCLS  300
SFVEISEICP SMSYSGSGIN NGSHDPSTLA MPTQALPKKG VYDIAYPDRG TVISRYKEKR  360
KNRRFDKQIR YESRKARADG RLRIKGRFAK SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201010.0AK120101.1 Oryza sativa Japonica Group cDNA clone:J013022K23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645435.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A0E0LPH80.0A0A0E0LPH8_ORYPU; Uncharacterized protein
STRINGOPUNC07G24010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-39B-box type zinc finger protein with CCT domain