PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G01030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27363.4 Da    PI: 7.0315
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G01030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.41.1e-241056248
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                     rien   rqvtf+kRr+g+lKKA ELSvLCda++ +iifs +gkly+
  OPUNC08G01030.1 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDADIGIIIFSAHGKLYD 56
                     8********************************************97 PP
2K-box32.73.1e-12114192986
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                      ++  +    +qe+  Lk+ei+ Lq+ +R + G++ +  ++++eL+ Le+ Le  + +iRs K+ +l++  e lq+k  e
  OPUNC08G01030.1 114 ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNSANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 192
                      4445556679***********************99726************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-24163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.576161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.01E-342113No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.691119209IPR002487Transcription factor, K-box
PfamPF014868.3E-13120189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSA HGKLYDLATT  60
GYLHLASASS PSNQIKKGFE LSSDIPWRLI DFLNRTMEEL IERYKSASGE QANACGDQRM  120
DPKQEAMVLK QEINLLQKGL RYIYGNSANE HMTVEELNAL ERYLEIWMYN IRSAKEGMLK  180
AANEILQEKI VEQNGLIDVG MMVADQQNGH FSTVPLLEEI TNPLTILSGY STCRGSEMGY  240
SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15160160MEF2C
5f28_B2e-15160160MEF2C
5f28_C2e-15160160MEF2C
5f28_D2e-15160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045661e-150AP004566.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498H04.
GenBankAP0149641e-150AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-150CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650791.11e-142MADS-box transcription factor 26
SwissprotA2YQK91e-143MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-143MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0E0LQL41e-180A0A0E0LQL4_ORYPU; Uncharacterized protein
STRINGOPUNC08G01030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-45AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]