PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G01880.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 167aa MW: 18121.2 Da PI: 9.2084

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G01880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	27.5	5.4e-09	67	89	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y rGA+++RC++C+ OPUNC08G01880.1 67 CSGCPTLLFYNRGASNIRCPSCN 89 **********************8 PP
2	zf-LSD1	32.2	1.7e-10	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ P+GA+ V+Ca C V OPUNC08G01880.1 105 CGQCRTTLMHPPGASTVQCATCRYV 129 **********************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.7E-5	24	54	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.8E-10	65	92	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.3E-9	67	89	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.2E-10	102	132	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.6E-11	105	129	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MMMMMIHPTT VVVVAARRGH MQDQLICSGC RRVVQFRRGV AGVCCPGCNT LTAVNPSAAA 60 DMSELICSGC PTLLFYNRGA SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST 120 VQCATCRYVN HVRDARPQTV LVENPKTLDD KGKLVSNVVV GVTSWKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120454	0.0	AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
GenBank	CT830765	0.0	CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648991.1	1e-104	protein LOL4
Swissprot	Q84UR0	1e-105	LOL4_ORYSJ; Protein LOL4
TrEMBL	A0A0E0LQX3	1e-119	A0A0E0LQX3_ORYPU; Uncharacterized protein
STRING	OPUNC08G01880.1	1e-120	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12333	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	9e-40	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]