PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G03850.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 222aa MW: 24541.9 Da PI: 4.1107

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G03850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.7	1.2e-30	14	119	1	100
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC++++ +C++dC lap fpa++p++f+++h +FG++++l++l+a e r + +++++ A+ar++dPv+Ga+g ilklqqql+ OPUNC08G03850.1 14 ACAACAHQGAsSCPPDCRLAPQFPADKPEHFRYAHLMFGMERILRFLEAEAEGIRpngttVISTATVIDLADARVEDPVHGAYGRILKLQQQLD 107 7******999********************************986655655544788999************************ PP DUF260 89 qlkaelallkee 100 +lkaela+l+++ OPUNC08G03850.1 108 RLKAELARLHHP 119 *****99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.311	13	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-24	14	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MAEPSPTPTT TQQACAACAH QGASSCPPDC RLAPQFPADK PEHFRYAHLM FGMERILRFL 60 EAEAEGIRPN GTTVISTATV IDLADARVED PVHGAYGRIL KLQQQLDRLK AELARLHHPA 120 TATAPSPGPA DDDVALQPPA QLSTPPALAR TEEEQEEDVD DDDEEDEEEE EEEEEDHVLE 180 PAMDAAATSG ERQEEGYFQR HNYFTVVTSS QYKLLKINST EY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0LRM2	1e-160	A0A0E0LRM2_ORYPU; Uncharacterized protein
STRING	OPUNC08G03850.1	1e-161	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16910	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-14	LOB domain-containing protein 1