PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G07010.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 398aa MW: 42809.6 Da PI: 9.0514

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G07010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.8	2.4e-15	37	97	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ OPUNC08G07010.1 37 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 97 89***************99***********************************997 PP
2	Homeobox	47.8	2.4e-15	163	223	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ OPUNC08G07010.1 163 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 223 89***************99***********************************997 PP
3	Wus_type_Homeobox	103.9	1e-33	36	98	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ OPUNC08G07010.1 36 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 98 689**********************************************************98 PP
4	Wus_type_Homeobox	103.9	1e-33	162	224	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ OPUNC08G07010.1 162 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 224 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.677	33	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-8	34	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-12	34	104	IPR009057	Homeodomain-like
SMART	SM00389	9.9E-6	35	102	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-13	37	97	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.677	159	224	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-8	160	229	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-12	160	229	IPR009057	Homeodomain-like
SMART	SM00389	9.9E-6	161	228	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-13	163	223	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDRTASWEVV SRRGELQAPA SHGGGHGHRG GEGEPARSRW APKPEQILIL ESIFNSGMVN 60 PAKDETARIR RLLERFGAVR DANVFYWFQN RRSRSRRRAR QLQQACGAAL HQLPSAAAAA 120 GGGGGGYYHH HHHDVVSRRG ELQAPASHGG GHGHRGGEGE PARSRWAPKP EQILILESIF 180 NSGMVNPAKD ETARIRRLLE RFGAVRDANV FYWFQNRRSR SRRRARQLQQ ACGAIGHHHV 240 HSSSPFLMHG GGGGGGVASA MTVPVAAAAA AASAHFLADD VDAGGDDDLF AISRQMGLMA 300 RGGGGGGGDH HYSSYADSDT TQLSYHHQPT GTTIQVFING VAYDVPSGGA LDMAGTFGRD 360 AMLVHSSGEV LPVDEHGVLI NSLQMGECYY LVGELINY

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDRTASWEVV SRRGELQAPA SHGGGHGHRG GEGEPARSRW APKPEQILIL ESIFNSGMVN  60
PAKDETARIR RLLERFGAVR DANVFYWFQN RRSRSRRRAR QLQQACGAAL HQLPSAAAAA  120
GGGGGGYYHH HHHDVVSRRG ELQAPASHGG GHGHRGGEGE PARSRWAPKP EQILILESIF  180
NSGMVNPAKD ETARIRRLLE RFGAVRDANV FYWFQNRRSR SRRRARQLQQ ACGAIGHHHV  240
HSSSPFLMHG GGGGGGVASA MTVPVAAAAA AASAHFLADD VDAGGDDDLF AISRQMGLMA  300
RGGGGGGGDH HYSSYADSDT TQLSYHHQPT GTTIQVFING VAYDVPSGGA LDMAGTFGRD  360
AMLVHSSGEV LPVDEHGVLI NSLQMGECYY LVGELINY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	1e-145	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	1e-145	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-145	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649642.1	1e-122	WUSCHEL-related homeobox 10
Swissprot	Q6Z3L4	1e-124	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	A0A0E0LSS1	0.0	A0A0E0LSS1_ORYPU; Uncharacterized protein
STRING	OPUNC08G07010.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	2e-28	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]