PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G08260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 278aa    MW: 28279.4 Da    PI: 9.3319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G08260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001185107123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C + F ++  L  H++ H
  OPUNC08G08260.1  85 FKCNYCQRKFYTSQALGGHQNAH 107
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-682112No hitNo description
Gene3DG3DSA:3.30.160.600.00183111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASSSQTTVS MEVAMKVEGS GGGGGGEEGE VVAKKEEEAA MELDLLGALR AEETAEKGKA  60
AAVMVGEAAT SAANGGGGEV RRRLFKCNYC QRKFYTSQAL GGHQNAHKRE RSLAKRGAAV  120
AAAAAAAGRG LYGFGDPFVP HHLRFRSLWP YPAGGGARTT PFLGRGSAST AAAPFYGAVH  180
HGWSAQPPSS LQGIAGRHAA AVERPVYHPS DAFGYGAGSS SSRAATASSF PSPAAAGLRW  240
AEGGSTAATA GAGDHSVAGE MKTQEEISSS KIDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-151CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875762.11e-109zinc finger protein 4
TrEMBLA0A0E0LT830.0A0A0E0LT83_ORYPU; Uncharacterized protein
STRINGOPUNC08G08260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.15e-20zinc-finger protein 1