PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G14640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 197aa    MW: 21004.5 Da    PI: 5.3591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G14640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151561148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEde l +av+++   +W+ Ia  ++ +R +k+c++rw ++l
  OPUNC08G14640.1 15 KTPWTEEEDEALRRAVREHQRQNWAEIALALP-RRGPKSCRLRWCQHL 61
                     579*****************************.***********9986 PP
2Myb_DNA-binding491.4e-1569110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+eEd ++v   + +G++ W+tIar+++ gR+++ +k+rw++
  OPUNC08G14640.1  69 AFTAEEDAIIVAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 110
                      79******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.7271065IPR017930Myb domain
SMARTSM007178.2E-161463IPR001005SANT/Myb domain
SuperFamilySSF466893.04E-2814108IPR009057Homeodomain-like
CDDcd001671.01E-141761No hitNo description
Gene3DG3DSA:1.10.10.604.5E-221768IPR009057Homeodomain-like
PfamPF139211.8E-151875No hitNo description
SMARTSM007171.8E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.53668116IPR017930Myb domain
CDDcd001672.76E-1069109No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2069115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAADGDGGGG GGGRKTPWTE EEDEALRRAV REHQRQNWAE IALALPRRGP KSCRLRWCQH  60
LSPELDSRAF TAEEDAIIVA QQRVHGNKWA TIARCLPGRS DNAVKNRWNS ALRKLLQHAG  120
GTGSPPAAAA AGDDQDVAPI CLELFPARSG GVNEAGLFAG EKDVEEDVAT SLTLGSPVVC  180
EAELELRLGP AWPAAIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-28151162103MYB3
3zqc_D4e-28151162103MYB3
3zqc_G4e-28151162103MYB3
3zqc_J4e-28151162103MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649306.17e-99transcription factor MYB77
SwissprotQ9SN121e-34MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0E0LVG31e-139A0A0E0LVG3_ORYPU; Uncharacterized protein
STRINGOPUNC08G14640.11e-139(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.16e-37myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]