PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G15570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 240aa    MW: 25651.8 Da    PI: 8.9881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G15570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-08162202954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  OPUNC08G15570.1 162 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 202
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12158212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6162202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-6176207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEFDMLNSNP ESQLELMNTM LQLEQLSAFP DHHGMVVPCS PTSPGMGAQG GHHFTSVNHQ  60
PHGGVSSGAN AGAGYRDQYY TQLPAAAYGN AAGGGGRSEY HTTTTTRPAS GGSGDGGVGP  120
AAMREMIFHI AALQPVNIDP ETVRPPKRRN VRISTDPQSV AARMRRERIS ERIRILQRLV  180
PGGTKMDTAS MLDEAIHYVK FLKTQVQSLE RAAAANGHRP PPPTATTATA VAYPGLNGQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RPPKRR
2162167RMRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046930.0AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875737.11e-131transcription factor HEC2
TrEMBLA0A0E0LVT31e-177A0A0E0LVT3_ORYPU; Uncharacterized protein
STRINGOPUNC08G15570.11e-178(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-39bHLH family protein