PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G16020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 218aa    MW: 23550.5 Da    PI: 7.8175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G16020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-132268354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  OPUNC08G16020.1 22 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 68
                     58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9291968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-142269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-112269No hitNo description
PfamPF000103.3E-112268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-132279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-112574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.0E-4120187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVTDGECSAA AAARKGGAPA VRSHSEAERK RRQRINAHLA TLRTLVPSAS RMDKAALLGE  60
VVRHVRELRC RADDATEGVD VVVPGEGDEV GVEDDDDDDE HEGCYIVGDR RWRRRVRAWV  120
CCADRPGLMS DLGRAVRSVS ARPVRAEIAT VGGRTRSVLE LDVVVASDAA DNDRAVALSA  180
LRAALRTVLL NRDELLAAAV AADGYKRPRF SPRCSSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039170.0AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.11e-105transcription factor AIG1
TrEMBLA0A0E0LVY71e-148A0A0E0LVY7_ORYPU; Uncharacterized protein
STRINGOPUNC08G16020.11e-149(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-13bHLH family protein