PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G16410.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 361aa    MW: 37654.2 Da    PI: 5.5807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G16410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-14139189154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  OPUNC08G16410.1 139 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 189
                      79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-14137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-14137194No hitNo description
PROSITE profilePS5088815.485138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17138203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGGA MAAEAAAGGA WSWSHGYGGG VDQGKGVMEL VVDDGVNACW  60
DGGGASSSPV MAAVPGFIEE PDGGNSSVAD AALPPPPPEH GGAAVVGQDG AAAAPAPAAG  120
RRKRRRARTV KNREEVESQR MTHIAVERNR RKQMNEYLAV LRSLMPASYV QRGDQASIIG  180
GAINYVKEME QLLQSLEAQR HARGARTDGV VAAAAAALPF AGFFTFPQYS MSAAPTTTTT  240
VAAAATENCN AVAGADDDAD ASGSKPSSVA DIEVTMVESH ANLKVLSRRR PRQLLRMVTG  300
LQHHRLAVLH LNVASAGHMA LYSLSLKVED DCQLTSVDDI AAAVHGIVEA IEQEQQQQSC  360
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125RKRRR
2139150RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588610.0HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.11e-166transcription factor bHLH96
SwissprotQ9C7T47e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0LW340.0A0A0E0LW34_ORYPU; Uncharacterized protein
STRINGOPUNC08G16410.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]