PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G16700.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 363aa MW: 37966.4 Da PI: 7.0106

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G16700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	7.9e-07	206	235	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.. CS HLH 3 rahnerErrRRdriNsafeeLrellPkask 32 +h+ +Er RR++i +++ L++l+P +sk OPUNC08G16700.1 206 NSHSLAERLRREKISERMKLLQDLVPGCSK 235 58************************9864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-8	200	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-5	201	242	No hit	No description
PROSITE profile	PS50888	10.499	203	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-7	207	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDANGGNGFG VESNASSVHG MAMSWQWHGG QMSSSSSCAA PPPVQPAMDS LAWSSSLSPS 60 SGAATAASGG GFLLPPAAVR GGFGNFPVNS GGLVEQVLRP SATNYVSGSD DAPPAGACSS 120 DSKKKRRSDE KIAGADHANA SNVLADSGNE TECTKDANGE VIGPPLPAAT AAAGGKSKGK 180 GGAKDAGEVQ KEGYSHVRAR KGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKFLSMK 240 LSAVNPRIDL DIESLVSNSK DVLRFPGPPS SAPMGLSFSP EMIPGLQLSR PGILQGGVHD 300 MINPDVFTSV MQKQQQNYKG AFREPQMHQT LDGSFHNTAQ MPYPQVMSSE ELSIRQDQDG 360 FHM

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDANGGNGFG VESNASSVHG MAMSWQWHGG QMSSSSSCAA PPPVQPAMDS LAWSSSLSPS  60
SGAATAASGG GFLLPPAAVR GGFGNFPVNS GGLVEQVLRP SATNYVSGSD DAPPAGACSS  120
DSKKKRRSDE KIAGADHANA SNVLADSGNE TECTKDANGE VIGPPLPAAT AAAGGKSKGK  180
GGAKDAGEVQ KEGYSHVRAR KGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKFLSMK  240
LSAVNPRIDL DIESLVSNSK DVLRFPGPPS SAPMGLSFSP EMIPGLQLSR PGILQGGVHD  300
MINPDVFTSV MQKQQQNYKG AFREPQMHQT LDGSFHNTAQ MPYPQVMSSE ELSIRQDQDG  360
FHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	126	KKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004557	6e-94	AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBank	AP014964	6e-94	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	6e-94	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650276.1	0.0	transcription factor bHLH79
TrEMBL	A0A0E0LW73	0.0	A0A0E0LW73_ORYPU; Uncharacterized protein
STRING	OPUNC08G16700.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	2e-28	cryptochrome-interacting basic-helix-loop-helix 5