PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G16820.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 508aa    MW: 54651.5 Da    PI: 7.5451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G16820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.6e-18223272255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  OPUNC08G16820.1 223 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 272
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-23220293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19221296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-15223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-16223276No hitNo description
SMARTSM003531.4E-13227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA AAATATDYSP LPRHPDSKPP APAPPPAQGF FLKTHDFLPQ  60
VEKRADQPPP PPPHAAGTTE KQVLQHALPA GGIAAGAFTI SHAAATAAAV KQEPPFAPWC  120
QPVAAVDPRG HQWSLPFAAR AVAVASSRPQ QQQPPPPPER KGGGGFMDAG SRSSGGAGFD  180
DDDGHAARRE VSSSLKELTV RVEGKGGSCS GSAGTDQMPN TPRSKHSATE QRRRSKINDR  240
FQLLRDLLPH NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SYPEWNQENA KVVPWTNIYF  300
RSSWKNAQNK GQVPADHSPD PPELLKNGSP YMFPFTGNSD NNNAVETAAA SGAQDQAETD  360
PMSRVSYRSV DTPSPNNVAD KVTSQPHAQL VRPSPAENHA VNCDKLNNSD LAIDEGTISL  420
SSQYSQELLN KLNHALENSG IDLSQASISV QINLGKRAMK RSTPAATSTS KELTDPASNS  480
QELGHQLRLG GGTEEHLQAS KRHKSDNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLA0A0E0LW900.0A0A0E0LW90_ORYPU; Uncharacterized protein
STRINGOPUNC08G16820.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-57BES1-interacting Myc-like protein 2