PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G18660.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 163aa    MW: 18367.7 Da    PI: 5.6264
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G18660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.39e-37201191100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er++a++++++eA ++++dPvyG++++i++lq++++ ++ el
  OPUNC08G18660.1  20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERSNAANTMAMEAYWKVQDPVYGCTRIINRLQEEIRAVQCEL 113
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  OPUNC08G18660.1 114 ARTQAH 119
                      *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.72619120IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3620117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQDPEEDDDD QQQQHPTARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN  60
VARLLQSLPM AERSNAANTM AMEAYWKVQD PVYGCTRIIN RLQEEIRAVQ CELARTQAHL  120
AVVVASSQQP PPPPPPPPQQ QQEEQSPPPL LDPANEFLNL DGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-282111512113LOB family transfactor Ramosa2.1
5ly0_B2e-282111512113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120713e-94AK112071.1 Oryza sativa Japonica Group cDNA clone:001-120-E04, full insert sequence.
GenBankAP0047083e-94AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12.
GenBankAP0047613e-94AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03.
GenBankAP0149643e-94AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126163e-94CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660281.11e-63PREDICTED: LOB domain-containing protein 24-like
SwissprotP594686e-37LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0E0LWW71e-114A0A0E0LWW7_ORYPU; Uncharacterized protein
STRINGOPUNC08G18660.11e-115(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.13e-28LOB domain-containing protein 23