PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G18850.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1102aa    MW: 122072 Da    PI: 6.6141
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G18850.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22130231199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OPUNC08G18850.2 130 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 219
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  OPUNC08G18850.2 220 AKQQLLLGIRRA 231
                      677789999997 PP
2Auxin_resp116.52.2e-38256339183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++
  OPUNC08G18850.2 256 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 339
                      79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-42120259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-40123245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-18129219No hitNo description
PROSITE profilePS5086311.646130232IPR003340B3 DNA binding domain
PfamPF023621.7E-20130231IPR003340B3 DNA binding domain
SMARTSM010191.5E-20130232IPR003340B3 DNA binding domain
PfamPF065074.6E-33256339IPR010525Auxin response factor
PfamPF023091.5E-59841063IPR033389AUX/IAA domain
PROSITE profilePS5174520.7179941077IPR000270PB1 domain
SuperFamilySSF542776.57E-510061064No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1102 aa     Download sequence    Send to blast
MASPGGGGGE EGEGRGVAKV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQVAASMRKD  60
ADAQIPSYPN LPSKLICILH SVTMLADPDT DEVYARMTLQ PVSNVTQCDK ETLLASELAL  120
KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSMQPPAQEL QARDLHDNVW  180
TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFIRDA KQQLLLGIRR ANRQPTNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSQFTIYY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KTSHWRNIQV AWDEAAPSER RTRVSLWEIE  360
PIIAPFFIYP SPLFTAKRPR LPGMTDEDTE MDGLLKRAMP WLGEEICKKD LSIQNSVVPG  420
LNLAQWMNMQ HNSSLPGTVV QPELLNSLSG KPVQNLAAAD LSRQISFHPQ FLQQNNIQFN  480
TALVPQQNQQ TEQLAKVIAT PNQLGSVIIP QKVVQDCNLE QRQHVVNQPV QGSQPNINIA  540
QPQLVVQAQL QQPQVILQAQ LQQPQVVVQA QLQQTQPSVQ SHTVLQGGLQ QIQLLQQQQP  600
HVQHQQIPQQ LQHHQQQTQQ LQPVQQVQQS VQEHQQIKIQ PVHVSTDASL NTQVADHQMK  660
LQLLKALQPQ QPLISEQQKM LLDLQQQMIN SQSAPQQCVT NQAISLHNSN TVQYPTQGKV  720
QSHQVQDLTG NVIPNSKSDI VTSMGASSLH AAGGRQLLKT DDVPSTSTSP STNSNPVLLQ  780
SIPSSSKNQS LTTAGKTSQS SVVLGPTIEQ DTKPYQNVKQ TVMIPKTTEQ RPAAGQDCIN  840
NNPQMDYLDT SSSATSVCLS QADGSLQQNF PPSSFHQHHL LKDTVPDSEF EVTDPRNNLL  900
FGVNIDGQLG LPLNADLLAN DIETDKYMDQ LPGNGISNFI SSKDSQQELS SSMISHSFGV  960
ADMAFNSIDS AINDTPFLNR NSRSAAGPAH QRMRTYTKVH KRGAVGRSID INRYSGYDEL  1020
KHDVARMFGI EGQLGDQNRV GWKLVYEDHE KDVLLVGDDP WEILSPQEEM QMRLVGDFGD  1080
SFLPNQACSS SDGGHPWRIT GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622036051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0E0LWZ30.0A0A0E0LWZ3_ORYPU; Auxin response factor
STRINGOPUNC08G18850.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]