PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G18940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 191aa    MW: 20570.7 Da    PI: 9.1349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G18940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-151261255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     g +GVr++  +grW+AeIr+p+    r+r ++g+f ++  Aa a++aa  +++g
  OPUNC08G18940.1 12 GLRGVRRRL-WGRWAAEIRVPRG---RARLWIGTFPSPTTAALAYDAALYCFHG 61
                     579***877.**********943...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6131273IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-151365IPR016177DNA-binding domain
PRINTSPR003672.3E-61324IPR001471AP2/ERF domain
PfamPF008474.2E-101361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-211473IPR001471AP2/ERF domain
SMARTSM003805.4E-181479IPR001471AP2/ERF domain
CDDcd000183.20E-121475No hitNo description
PRINTSPR003672.3E-63551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVPPAHAPKN LGLRGVRRRL WGRWAAEIRV PRGRARLWIG TFPSPTTAAL AYDAALYCFH  60
GGAPPGNRAF NFPYAPRLRI DDRRRHALTL GHVRAIAERY AHDVGSVLFR PLPPALPIAA  120
PVPVFAVAAT PMVAAPAPAV ANHAAAAATD PYYCNEPDTT TDEDVMAAAD RLLSMDIEEV  180
AALIAIVQQG E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082081e-130AK108208.1 Oryza sativa Japonica Group cDNA clone:002-140-D07, full insert sequence.
GenBankAP0038651e-130AP003865.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1081_B12.
GenBankAP0055091e-130AP005509.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1003_A09.
GenBankAP0149641e-130AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-130CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649451.17e-82ethylene-responsive transcription factor ERF015
TrEMBLA0A0E0LX031e-132A0A0E0LX03_ORYPU; Uncharacterized protein
STRINGOPUNC08G18940.11e-133(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555