PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19670.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 19763.8 Da    PI: 7.9484
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19670.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+++fs+ g+lye++s
  OPUNC08G19670.4  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALVVFSPAGRLYEFAS 59
                     79***********************************************86 PP
2K-box17.81.4e-07961511671
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                        q+e++ L + + ++ +    +l  ++++L++ eL+ Le+++ ++l+ +++k + 
  OPUNC08G19670.4  96 LRQKEHSVLDDPVPKINHITQCVLESNVNELNIAELRGLEEAMTNALTVVKNKLMM 151
                      5567777777777777776677777889**********************988654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.927161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-31279IPR002100Transcription factor, MADS-box
CDDcd002653.87E-40271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-32323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALVVFSP AGRLYEFASS  60
TSSIDKIFGR YWDLMHTTID LNIEARDYRV DCNIQLRQKE HSVLDDPVPK INHITQCVLE  120
SNVNELNIAE LRGLEEAMTN ALTVVKNKLM MKVAGVLPQS EKKSCWISEP DQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21173171Myocyte-specific enhancer factor 2B
1tqe_Q3e-21173171Myocyte-specific enhancer factor 2B
1tqe_R3e-21173171Myocyte-specific enhancer factor 2B
1tqe_S3e-21173171Myocyte-specific enhancer factor 2B
6c9l_A3e-21173171Myocyte-specific enhancer factor 2B
6c9l_B3e-21173171Myocyte-specific enhancer factor 2B
6c9l_C3e-21173171Myocyte-specific enhancer factor 2B
6c9l_D3e-21173171Myocyte-specific enhancer factor 2B
6c9l_E3e-21173171Myocyte-specific enhancer factor 2B
6c9l_F3e-21173171Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429800.0AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.11e-100MADS-box transcription factor 51-like isoform X2
TrEMBLA0A0E0LX981e-126A0A0E0LX98_ORYPU; Uncharacterized protein
STRINGORGLA08G0229900.11e-100(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.34e-41MIKC_MADS family protein